Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   196   2e-51
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   196   2e-51
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    37   0.002
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   0.97 
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   3.0  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   5.2  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   9.0  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  196 bits (477), Expect = 2e-51
 Identities = 90/136 (66%), Positives = 109/136 (80%)
 Frame = +1

Query: 1   SFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 180
           +FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 12  AFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 181 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIG 360
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123

Query: 361 ECRPLSKTVRFNVLKV 408
           +CRPLSKTVRFNVL+V
Sbjct: 124 QCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  196 bits (477), Expect = 2e-51
 Identities = 90/136 (66%), Positives = 109/136 (80%)
 Frame = +1

Query: 1   SFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 180
           +FQKQP +F N KKG G        R++KDVGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 12  AFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 181 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIG 360
           GRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVG 123

Query: 361 ECRPLSKTVRFNVLKV 408
           +CRPLSKTVRFNVL+V
Sbjct: 124 QCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 196 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIGECRPL 375
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 376 SKTVRFNVLKV 408
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 395 LNLTVLDKGLHSPIVTISPIXTSLKQGDKCTDMFLCRFSN 276
           L+ + + K L SP+ TI+     L  G +  D+FL  FSN
Sbjct: 6   LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 107 LKPRPTSLWYLNGFLLRFTP 48
           L P+PT+ W  NGF  + TP
Sbjct: 187 LPPKPTTPWRRNGFRSKTTP 206


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 344 SPIXTSLKQGDKCTDMFLCRFSN 276
           SP   SL  GD   ++FL ++SN
Sbjct: 255 SPFEYSLLSGDNANEIFLTKYSN 277


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 49  GVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDK 147
           G+K + +P  Y   VGLG K  +  I  T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 331 VXIGDIVTIGECRPLSKTVRFNVL 402
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,852
Number of Sequences: 5004
Number of extensions: 36454
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)