Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   202   1e-52
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   6.2  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   6.2  
Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.1  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   8.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   8.1  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  202 bits (493), Expect = 1e-52
 Identities = 95/136 (69%), Positives = 110/136 (80%)
 Frame = +1

Query: 1   SFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 180
           +F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+A+EGTYIDKKCP+ GNV IR
Sbjct: 8   AFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIR 66

Query: 181 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIG 360
           G ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIG
Sbjct: 67  GMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIG 126

Query: 361 ECRPLSKTVRFNVLKV 408
           ECRPLSKTVRFNVLKV
Sbjct: 127 ECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 402 QNIESNCFGQRSAFADRYNITNXHVPEARRQMYGH 298
           +++E  CF Q   F D +N+T   + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 204 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 323
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 519 IGRIGYRAPPRVFFFFF 469
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 519 IGRIGYRAPPRVFFFFF 469
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 183 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 49
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 183 AADRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLHT 49
           + D  +   G ++ ++  LN L GS ETE   + +       LHT
Sbjct: 55  SGDEEIVQSGAIIRHLARLNGLNGSNETETTFIDMFYEGLRDLHT 99


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 9    KTTYSLSEPQERYWCEAEQKTVEIPQGCGPRFQDSP 116
            K TY +++P +   C  EQ        C P  Q  P
Sbjct: 1847 KCTYDITKPMDPITCSCEQNAAAHNTDCSPICQKQP 1882


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,331
Number of Sequences: 27780
Number of extensions: 215205
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)