Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 196 7e-51
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 191 3e-49
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 186 1e-47
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 38 0.003
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 36 0.012
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.47
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.62
At5g17670.1 68418.m02071 expressed protein 27 5.8
At4g26980.1 68417.m03882 expressed protein 27 5.8
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.8
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 7.7
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 196 bits (478), Expect = 7e-51
Identities = 93/137 (67%), Positives = 110/137 (80%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 SFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSI 177
+F KQP VFL+ KK G G + + R+ K++GLGFKTPREAIEGTYID+KCPFTG VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSI 67
Query: 178 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTI 357
RGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V GD VTI
Sbjct: 68 RGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTI 126
Query: 358 GECRPLSKTVRFNVLKV 408
G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 191 bits (465), Expect = 3e-49
Identities = 89/137 (64%), Positives = 107/137 (78%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 SFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSI 177
+F KQP VFL+ KK G G + + R+ K++GLGFKTPREAI+G Y+DKKCPFTG VSI
Sbjct: 8 AFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSI 67
Query: 178 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTI 357
RGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR V GD + I
Sbjct: 68 RGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIII 126
Query: 358 GECRPLSKTVRFNVLKV 408
G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 186 bits (452), Expect = 1e-47
Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Frame = +1
Query: 1 SFQKQPTVFLNRK-KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSI 177
+F KQP VFL+ K G G + + R+ K++GLGFKTPREAI+G YID KCPFTG VSI
Sbjct: 8 AFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSI 67
Query: 178 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTI 357
RGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V GD V I
Sbjct: 68 RGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVII 126
Query: 358 GECRPLSKTVRFNVLKV 408
G+CRPLSKTVRFNVLKV
Sbjct: 127 GQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 196 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-XIGDIVTIGECRP 372
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 373 LSKTVRFNVLKV 408
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.3 bits (80), Expect = 0.012
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +1
Query: 184 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIGE 363
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 364 CRPLSK 381
RPLSK
Sbjct: 60 SRPLSK 65
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 70 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 156
P++YHKD G KT R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 30.7 bits (66), Expect = 0.62
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 184 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVXIGDIVTIGE 363
+ + G V +T+ + L PKY R + + H P +GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 364 CRPLSKTVRFNVLKV 408
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 116 RGVLKPRPTSLWYLN 72
RG L+PRP WYLN
Sbjct: 86 RGTLRPRPVLDWYLN 100
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 106 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 210
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 181 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 297
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 88 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRT 228
D+G+GF ++G +D +G+ S+R R++ TG + + ++ T
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLEST 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,448
Number of Sequences: 28952
Number of extensions: 198522
Number of successful extensions: 434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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