Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D10f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   8.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 43  ITDGVKLQYSKRLFIDSF-NVFFFSLFCCYFI 135
           +T  V L      ++ +F ++FFF   CC FI
Sbjct: 54  LTSSVTLHVCFNSYMYAFTHIFFFFAICCDFI 85


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 218 GGIISESTGDFLQTKSLIVIS 156
           GG+ISE     LQ  +L  +S
Sbjct: 22  GGVISEGVASSLQVVALFQLS 42


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 406 LVVFFFYYLXRNSANSRNCLQNTF 477
           L +F  Y++   +  + NCL+  F
Sbjct: 327 LAIFILYFICDEAHYASNCLRVQF 350


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 116 REKKNTLKLSINSRFEYCN 60
           +EKK T K S    FE+ N
Sbjct: 119 KEKKTTRKSSQQGNFEFRN 137


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,584
Number of Sequences: 336
Number of extensions: 1626
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)