Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    30   0.24 
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   5.2  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.0  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 360 LILYVFFYDLGSYDMTGCIFFLL 428
           LILY FF D+    MT   FFLL
Sbjct: 348 LILYYFFLDISKLQMTSLTFFLL 370


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 329 NSNIRFKNVDFDFVCFFLRSGKLRYDWLYFFFIILXGTV 445
           +S++  KNV +   C ++ S    Y W++ F I   G +
Sbjct: 120 HSSMENKNVRYSMKCNWIASPNDEYTWVFHFDIDKKGII 158


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 371 CFFLRSGKLRYDWLYFFFIILXGTVLTLGIVYKTRSFK--RGQNGLAMXWLI 520
           CFF+R GKL +    F+ I     V +L ++  ++ F    G N +A  +L+
Sbjct: 120 CFFIRFGKLGHCVYLFYCISTNVLVSSLLLLGGSQGFSSTTGMNTVAACFLL 171


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 216 RYHFRINWRFLANKKFDRYLGLSLRSPY 133
           ++ FR+   F+A++ FD+ +  +LR PY
Sbjct: 435 KFGFRLLNPFIASQHFDQMIHNNLRLPY 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,440
Number of Sequences: 5004
Number of extensions: 27135
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)