Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.4  
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 27   9.4  

>SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 YDWLYFFFIILXGTVLTLGIVYKTRSFKRGQNGL 502
           +DWL+F F  L   ++T  +V ++R  K+   G+
Sbjct: 96  FDWLFFVFFTLSSCIVTSWLVVQSRGLKQLSCGI 129


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 113  EKKNTLKLSINSRFEYCNLTPSVILHDLKRYVKI 12
            +KKN+ KL   +R +Y  +T S+    L RYV+I
Sbjct: 2154 KKKNSWKLYNGNRDQYSTVTESINPPILARYVRI 2187


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 429 IIKKKYNQSYRSFPDRKKKHTKSK-STFLNRILLF 328
           + +KK      + PDR KK  KSK S F++  L+F
Sbjct: 35  VYEKKIENETANTPDRAKKEKKSKYSRFVSTSLMF 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,807
Number of Sequences: 59808
Number of extensions: 173561
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)