Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 368 VCF-FLRSGKLRYDWLYFFFIILXGTVLTLGIVYKT 472
           +CF FL+  +L + W  +  I+L      L +VY T
Sbjct: 99  LCFDFLQQPRLNHSWYIYKLILLTNLAFVLNVVYST 134


>Z81458-2|CAB03822.1|  386|Caenorhabditis elegans Hypothetical
           protein C03E10.3 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 335 NIRFKNVDFDFVCF----FLRSGKLRYDWLYFFFI 427
           NI+F+   F   CF    +L S ++ Y +LY FF+
Sbjct: 337 NIQFREPSFSNNCFLNILYLSSNQITYIYLYLFFV 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,074,897
Number of Sequences: 27780
Number of extensions: 146526
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)