Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 453 RVSTVPXKIIKKKYNQSYRSFPDRKKKHTKSKSTFLNR 340
           R  TVP K +  KY       P   +K  +  +T L R
Sbjct: 321 RKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLER 358


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 386 SGKLRYDWLYFFFIILXGTVLTLGIVYKTRSF 481
           +G L   W+  +F I  G   T  +VY T  F
Sbjct: 210 AGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 386 SGKLRYDWLYFFFIILXGTVLTLGIVYKTRSF 481
           +G L   W+  +F I  G   T  +VY T  F
Sbjct: 263 AGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLF 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,152
Number of Sequences: 438
Number of extensions: 1886
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)