Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D09f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 108 2e-24
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 106 8e-24
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 105 2e-23
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 101 3e-22
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 101 4e-22
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot... 101 4e-22
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 100 1e-21
At2g34900.2 68415.m04284 DNA-binding bromodomain-containing prot... 100 1e-21
At3g52280.1 68416.m05746 DNA-binding bromodomain-containing prot... 99 2e-21
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 98 4e-21
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 97 8e-21
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 97 8e-21
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 95 3e-20
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 94 4e-20
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 70 1e-12
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 65 2e-11
At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly... 64 4e-11
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 56 1e-08
At1g76380.2 68414.m08875 DNA-binding bromodomain-containing prot... 56 1e-08
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 56 1e-08
At5g55040.1 68418.m06859 DNA-binding bromodomain-containing prot... 52 3e-07
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 43 1e-04
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 43 1e-04
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 42 3e-04
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 38 0.004
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot... 31 0.62
At1g19220.1 68414.m02392 transcriptional factor B3 family protei... 29 1.4
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 29 1.9
At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate transloca... 27 7.7
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 108 bits (260), Expect = 2e-24
Identities = 57/126 (45%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Frame = -2
Query: 490 LKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYK 311
+K C +LK L S + Y W F PVD L + DYF++I+ PMDLGTVKNK+ Y
Sbjct: 138 MKQCEALLKRLMSHQ---YGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYS 194
Query: 310 SAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRY---------AKIPDEPVHV 158
+EFAADVRL F+N YNPP +DV MA L+ FE+R+ K+ EP ++
Sbjct: 195 CPSEFAADVRLTFSNAMTYNPPGNDVYVMADTLRKFFEVRWKTLEKKLSGTKVHTEPSNL 254
Query: 157 AAHAEK 140
AH EK
Sbjct: 255 DAHKEK 260
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 106 bits (255), Expect = 8e-24
Identities = 55/104 (52%), Positives = 66/104 (63%)
Frame = -2
Query: 490 LKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYK 311
LKSCN +L +L K SG W F PVD LGLHDY +IIK+PMDLGTVK ++ YK
Sbjct: 120 LKSCNNLLTKLMKHK-SG--WIFNTPVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYK 176
Query: 310 SAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
S EFA DVRL F N YNP HDV MA L ++FE ++ +
Sbjct: 177 SPLEFAEDVRLTFNNAMLYNPVGHDVYHMAEILLNLFEEKWVPL 220
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 105 bits (251), Expect = 2e-23
Identities = 53/103 (51%), Positives = 66/103 (64%)
Frame = -2
Query: 487 KSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKS 308
K+CN +L +L KH AW F PVDA+ LGLHDY +I+K+PMDLGTVK K+ YKS
Sbjct: 134 KNCNSLLTKLM--KHKS-AWVFNVPVDAKGLGLHDYHNIVKEPMDLGTVKTKLGKSLYKS 190
Query: 307 AAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
+FA DVRL F N YNP HDV A L ++FE ++ I
Sbjct: 191 PLDFAEDVRLTFNNAILYNPIGHDVYRFAELLLNMFEDKWVSI 233
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 101 bits (242), Expect = 3e-22
Identities = 50/104 (48%), Positives = 63/104 (60%)
Frame = -2
Query: 490 LKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYK 311
+K C +LK L S++H W F PVD L + DYF IIK PMDLGTVK+K+ Y
Sbjct: 130 MKQCESLLKRLMSQQH---CWLFNTPVDVVKLNIPDYFTIIKHPMDLGTVKSKLTSGTYS 186
Query: 310 SAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
S +EF+ADVRL F N YNP D++V A L FE+R+ I
Sbjct: 187 SPSEFSADVRLTFRNAMTYNPSDNNVYRFADTLSKFFEVRWKTI 230
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 101 bits (241), Expect = 4e-22
Identities = 51/104 (49%), Positives = 61/104 (58%)
Frame = -2
Query: 490 LKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYK 311
+K C+ +L++L+S HS W F PVD L + DY IK PMDLGTVK + Y
Sbjct: 177 MKQCDTLLRKLWSHPHS---WVFQAPVDVVKLNIPDYLTTIKHPMDLGTVKKNLASGVYS 233
Query: 310 SAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
S EFAADVRL FTN YNPP HDV M L +FE R+ I
Sbjct: 234 SPHEFAADVRLTFTNAMTYNPPGHDVHIMGDILSKLFEARWKTI 277
>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 386
Score = 101 bits (241), Expect = 4e-22
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = -2
Query: 520 AKGKEKLS-DALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGT 344
+KGK S D ++ + +++ K +AWPF +PVD + LGLHDY+ +I+KPMDLGT
Sbjct: 100 SKGKHVSSPDLMRQFATMFRQIAQHK---WAWPFLEPVDVKGLGLHDYYKVIEKPMDLGT 156
Query: 343 VKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
+K KM+ Y + E ADVRL+F N +YN DV MA L + FE ++ I
Sbjct: 157 IKKKMESSEYSNVREIYADVRLVFKNAMRYNEEKEDVYVMAESLLEKFEEKWLLI 211
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 99.5 bits (237), Expect = 1e-21
Identities = 51/107 (47%), Positives = 65/107 (60%)
Frame = -2
Query: 517 KGKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVK 338
+ ++ L+ L +C++IL +L K +AW F PVD LGLHDY ++KKPMDLGTVK
Sbjct: 161 ESEKLLAGMLNTCSQILVKLMKHK---WAWVFNTPVDVVGLGLHDYHQVVKKPMDLGTVK 217
Query: 337 NKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFE 197
+D Y S +FA DVRL F N YNP DV MA KL D F+
Sbjct: 218 LNLDKGFYVSPIDFATDVRLTFDNAMTYNPKGQDVYFMADKLLDHFD 264
>At2g34900.2 68415.m04284 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 276
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/86 (50%), Positives = 57/86 (66%)
Frame = -2
Query: 436 YAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYK 257
+AWPF +PVD + LGLHDY+ +I+KPMDLGT+K KM+ Y + E ADVRL+F N +
Sbjct: 16 WAWPFLEPVDVKGLGLHDYYKVIEKPMDLGTIKKKMESSEYSNVREIYADVRLVFKNAMR 75
Query: 256 YNPPDHDVVAMARKLQDVFEMRYAKI 179
YN DV MA L + FE ++ I
Sbjct: 76 YNEEKEDVYVMAESLLEKFEEKWLLI 101
>At3g52280.1 68416.m05746 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 369
Score = 99.1 bits (236), Expect = 2e-21
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Frame = -2
Query: 520 AKGKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTV 341
A +++ D ++ I +++ K AWPF PV+ E LGLHDYF++I KPMD T+
Sbjct: 85 AVAAKRMQDLMRQFGTIFRQITQHK---CAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTI 141
Query: 340 KNKM---DGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYA 185
KN+M DG YK + AD+RL+F N YN DV +MA+KL + FE ++A
Sbjct: 142 KNQMEAKDGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEKWA 196
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 97.9 bits (233), Expect = 4e-21
Identities = 48/103 (46%), Positives = 62/103 (60%)
Frame = -2
Query: 502 LSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDG 323
L + +C +IL +L K ++W F PVD LGLHDY I+ KPMDLGTVK ++
Sbjct: 246 LKSMMTTCGQILVKLMKHK---WSWVFLNPVDVVGLGLHDYHRIVDKPMDLGTVKMNLEK 302
Query: 322 RAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEM 194
Y+S +FA+DVRL FTN YNP DV MA KL F++
Sbjct: 303 GLYRSPIDFASDVRLTFTNAMSYNPKGQDVYLMAEKLLSQFDV 345
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 96.7 bits (230), Expect = 8e-21
Identities = 50/103 (48%), Positives = 62/103 (60%)
Frame = -2
Query: 487 KSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKS 308
K+C+ +L+ L KH W F PVD + LGL DY+ II+ PMDLGT+K+ + YKS
Sbjct: 423 KNCSALLERLMKHKHG---WVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKS 479
Query: 307 AAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
EFA DVRL F N YNP DV MA L +FE R+A I
Sbjct: 480 PREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVI 522
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 96.7 bits (230), Expect = 8e-21
Identities = 50/103 (48%), Positives = 62/103 (60%)
Frame = -2
Query: 487 KSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKS 308
K+C+ +L+ L KH W F PVD + LGL DY+ II+ PMDLGT+K+ + YKS
Sbjct: 423 KNCSALLERLMKHKHG---WVFNAPVDVKGLGLLDYYTIIEHPMDLGTIKSALMKNLYKS 479
Query: 307 AAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
EFA DVRL F N YNP DV MA L +FE R+A I
Sbjct: 480 PREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVI 522
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 95.1 bits (226), Expect = 3e-20
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = -2
Query: 502 LSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDG 323
++ +K C +L L+S K SG WPF PVD +L + DYF++IK PMDLGT+++++
Sbjct: 158 VASVMKECETLLNRLWSHK-SG--WPFRTPVDPVMLNIPDYFNVIKHPMDLGTIRSRLCK 214
Query: 322 RAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKI 179
Y S +FAADVRL F+N YNPP + MA+ + FE + I
Sbjct: 215 GEYSSPLDFAADVRLTFSNSIAYNPPGNQFHTMAQGISKYFESGWKSI 262
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 94.3 bits (224), Expect = 4e-20
Identities = 49/119 (41%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = -2
Query: 517 KGKEKLS-DALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTV 341
K K++L D C +L+ F +H G W F +PVD + + DYF++I+KPMDLGTV
Sbjct: 60 KKKQRLDCDWSSQCLALLR--FLMEHRG-GWLFKEPVDPVKMEIPDYFNVIQKPMDLGTV 116
Query: 340 KNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKIPDEPV 164
K+K+ Y +A EFAADVRL F N YNP ++V +A+++ ++FE+R+ + + V
Sbjct: 117 KSKLLKNVYSNADEFAADVRLTFANAMHYNPLWNEVHTIAKEINEIFEVRWESLMKKKV 175
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 69.7 bits (163), Expect = 1e-12
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = -2
Query: 511 KEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNK 332
K++L D+L +I+K A PF PV+ E LG+ DYFDIIK PMD GT+ N
Sbjct: 213 KQELEDSLIVIKKIMK-------MEAADPFNVPVNPEALGIPDYFDIIKTPMDFGTICNN 265
Query: 331 MD-GRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRY 188
+ G Y ++ + DV I+ NC KYN +V + ++++ F M+Y
Sbjct: 266 FEKGNKYMNSEDVYKDVNYIWNNCSKYNKKGDYIVDLMKRVKKNF-MKY 313
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 65.3 bits (152), Expect = 2e-11
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -2
Query: 415 PVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHD 236
PVD E L DYF+IIK PMD T++NK+D AY + +F DV LI TN +YN D
Sbjct: 199 PVDPE--ELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFLICTNAMEYNSADTV 256
Query: 235 VVAMARKLQDV 203
AR +Q++
Sbjct: 257 YYRQARAIQEL 267
>At3g54610.1 68416.m06042 histone acetyltransferase (GCN5) nearly
identical to histone acetyltransferase GCN5 [Arabidopsis
thaliana] GI:13591696; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00439: Bromodomain
Length = 568
Score = 64.5 bits (150), Expect = 4e-11
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = -2
Query: 487 KSCNEILKELF-SKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYK 311
K N +++ L + + AWPF +PVD+ + DY+DIIK P+DL + +++ Y
Sbjct: 458 KQLNALMRALLKTMQDHADAWPFKEPVDSR--DVPDYYDIIKDPIDLKVIAKRVESEQYY 515
Query: 310 SAAE-FAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMR 191
+ F AD R +F NC YN PD A +L+ F +
Sbjct: 516 VTLDMFVADARRMFNNCRTYNSPDTIYYKCATRLETHFHSK 556
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = -2
Query: 415 PVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHD 236
P D E L DY++IIK PMD T++ K++ AY + +F A+V LI TN +YN D
Sbjct: 168 PADPE--ELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEANVFLICTNAMEYNSADTV 225
Query: 235 VVAMARKLQDVFEMRYAKIPDE 170
AR + ++ + + + E
Sbjct: 226 YYRQARAMLELAKKDFGNLRQE 247
>At1g76380.2 68414.m08875 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 580
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 415 PVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHD 236
P D E L DY++IIK PMD T++ K++ AY + +F DV LI TN +YN D
Sbjct: 169 PADPE--ELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLICTNAMEYNSADTV 226
Query: 235 VVAMARKLQDVFEMRYAKIPDE 170
AR + ++ + + + E
Sbjct: 227 YYRQARAMLELAKKDFGNLRQE 248
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 415 PVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHD 236
P D E L DY++IIK PMD T++ K++ AY + +F DV LI TN +YN D
Sbjct: 168 PADPE--ELPDYYEIIKNPMDFTTLRKKLESGAYTTLEQFEQDVFLICTNAMEYNSADTV 225
Query: 235 VVAMARKLQDVFEMRYAKIPDE 170
AR + ++ + + + E
Sbjct: 226 YYRQARAMLELAKKDFGNLRQE 247
>At5g55040.1 68418.m06859 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 145
Score = 51.6 bits (118), Expect = 3e-07
Identities = 32/82 (39%), Positives = 44/82 (53%)
Frame = -2
Query: 487 KSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKS 308
KS IL +L K G + +PVD E L DY D+I+ PMD TV+ K+ +Y +
Sbjct: 49 KSLELILDKLQKKDIYGV---YAEPVDPE--ELPDYHDMIEHPMDFSTVRKKLANGSYST 103
Query: 307 AAEFAADVRLIFTNCYKYNPPD 242
E +DV LI +N +YN D
Sbjct: 104 LEELESDVLLICSNAMQYNSSD 125
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/89 (31%), Positives = 47/89 (52%)
Frame = -2
Query: 517 KGKEKLSDALKSCNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVK 338
KG+ L++ L+S + L+ K ++ F KPV + +Y +I+K PMDL T++
Sbjct: 1574 KGQVGLANILESIVDTLRV----KEVNVSYLFLKPVTKK--EAPNYLEIVKCPMDLSTIR 1627
Query: 337 NKMDGRAYKSAAEFAADVRLIFTNCYKYN 251
+K+ Y+ +F DV I N + YN
Sbjct: 1628 DKVRRMEYRDRQQFRHDVWQIKFNAHLYN 1656
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -2
Query: 424 FYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYN 251
F KPV + DY DI++ PMDL T+++K+ Y++ +F DV I N + YN
Sbjct: 1824 FLKPVSKK--EAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYN 1879
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 41.5 bits (93), Expect = 3e-04
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = -2
Query: 481 CNEILKELFSKKHSGYAWPFYKPVDAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAA 302
CN IL + K+ S F+ PV E +Y II+ PMD T+ ++D Y +
Sbjct: 906 CNRIL---YDKRFSA----FHFPVTDE--DAPNYRSIIQIPMDTATLLQRVDTGQYLTCT 956
Query: 301 EFAADVRLIFTNCYKYNPPDH---DVVAMARKLQDV 203
F DV LI N YN D+ +V+ A +L+DV
Sbjct: 957 PFLQDVDLIVRNAKAYNGDDYAGARIVSRAYELRDV 992
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -2
Query: 385 DYFDIIKKPMDLGTVKNKMDGRAY-KSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQ 209
DY +I++ +D+ T++ KM+ +Y S+ F D++L+FTN + P A++L+
Sbjct: 127 DYKRLIRQHLDMKTIEKKMEKGSYVSSSLSFYRDLKLLFTNAIVFFPTSSSESIAAQELR 186
Query: 208 DVFEMRYAKIPDEPVHVAAHAE 143
+ K + H +E
Sbjct: 187 TLVSNEMKKRTGKLGHCVIKSE 208
>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 632
Score = 30.7 bits (66), Expect = 0.62
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 385 DYFDIIKKPMDLGTVKNKMDGRAYKSA-AEFAADVRLIFTNC-YKYNPPDHDVVAMARKL 212
DY+ II++ +D ++++++ YK+A +F D+ L+ N Y P + A +
Sbjct: 305 DYYRIIRQHIDFEMIRSRVEEGYYKTARTKFFRDLLLLINNVRVFYGEPSPEFNAAKQLY 364
Query: 211 QDVFEMRYAKIPDE 170
Q + + KIP +
Sbjct: 365 QLIKKQMSFKIPKQ 378
>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 1086
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 162 MLRHMQKKEALHQVQ-NLDQSPIQNQMIQKKKE 67
+LR+ Q++ +LH +Q NL Q+P Q QM Q+ +
Sbjct: 607 LLRNQQEQSSLHSLQQNLSQNPQQLQMQQQSSK 639
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 370 IKKPMDLG-TVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEM 194
+K DLG T+ Y S E A + + Y+ D+ +V RK++ + +
Sbjct: 119 LKAKKDLGLTLAADALNAGYNSDEEVYAAAKAVDAGMLDYDSDDNPIVVDKRKIEPITAL 178
Query: 193 RYAKIPDEPVH 161
++ I EP++
Sbjct: 179 DHSSIDYEPIN 189
>At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate
translocator-related similar to glucose 6
phosphate/phosphate translocators from Pisum sativum]
GI:2997591, [Mesembryanthemum crystallinum] GI:9295277,
[Solanum tuberosum] GI:2997593; contains Pfam profile
PF00892: Integral membrane protein
Length = 341
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 282 VLYLQTVTSTTRQTMMLLRWLVNYKTF 202
V ++QT+ S T T ++L+WLV K F
Sbjct: 107 VSFMQTIKSLTPATTVVLQWLVWRKYF 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,915,979
Number of Sequences: 28952
Number of extensions: 178814
Number of successful extensions: 527
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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