Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             238   2e-63
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               96   2e-20
SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)               29   1.8  
SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   3.1  
SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)                   28   4.1  
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)                   28   5.4  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  238 bits (583), Expect = 2e-63
 Identities = 108/137 (78%), Positives = 121/137 (88%)
 Frame = +3

Query: 111 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 290
           K PYK+AD  LAEWGRKEI+LAE EMPGLMA R++Y P+K LKGARIAG LHMT+QTAVL
Sbjct: 6   KLPYKVADISLAEWGRKEIVLAENEMPGLMALRKEYGPSKPLKGARIAGCLHMTIQTAVL 65

Query: 291 IETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDG 470
           IETL ELGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+EYIWCIEQTL+F DG
Sbjct: 66  IETLTELGAEVQWSSCNIFSTQDHAAAAIAKTGVPVYAWKGETDEEYIWCIEQTLVFKDG 125

Query: 471 KPLNMILDDGGDLXNLV 521
           +PLNMILDDGGDL NLV
Sbjct: 126 QPLNMILDDGGDLTNLV 142


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 41/79 (51%), Positives = 61/79 (77%)
 Frame = +3

Query: 285 VLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFP 464
           VLIETL+ LGA+++W + NIYSTQ+E AAA+   G+ I+AWKGE+++++ WCIE+ +   
Sbjct: 125 VLIETLMALGAQIRWCACNIYSTQNEVAAAMAESGLSIFAWKGESEEDFWWCIEKCITSN 184

Query: 465 DGKPLNMILDDGGDLXNLV 521
             +P NM+LDDGGD  +L+
Sbjct: 185 GWQP-NMVLDDGGDATHLM 202


>SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +3

Query: 102 YKMKPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRR--KYAPAKILKGARIAGSLHMTV 275
           YKM P  KIA +K+ +  RK +   E     +  CR   K    +ILK  ++ G      
Sbjct: 219 YKMVPDKKIACDKIRDVIRKHLRFLETTEYEVNRCREISKLLSNRILKDLKLLGFPRYKF 278

Query: 276 QTAVLIETLIELGAEVQWSSSNIYSTQDE 362
            ++V I  +  LG  V+ +S  ++ T+ +
Sbjct: 279 VSSVCIGQM--LGQSVRIASRCVWDTESD 305


>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
          Length = 69

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 458 DQCLFNTPNILVISFSLPGIDGYSYGNQCSCGLVLCTINVT 336
           D+C+   P    I+  + G DG +YGN+C  G   C  N T
Sbjct: 22  DKCVRPCP---AINDPVCGTDGKTYGNECMLGAATCHSNGT 59


>SB_12514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 168 MLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIY 347
           +L++   P     +RKY      K   +A SL  T+    +   +++L AE++   +N +
Sbjct: 23  ILSDTFQPFYFKLQRKYYVNTTYKFRDLACSLKYTIGVCYVRNKVLDLSAEIRTYFNNTF 82

Query: 348 STQDEAAAALVAVGIP 395
           S +  A   L    IP
Sbjct: 83  SKRQTACQMLYRYLIP 98


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 404 GIDGYSYGNQCSCGLVLCTINVT 336
           G DG +YGN+C  G   C  N T
Sbjct: 57  GTDGKTYGNKCMLGAATCRSNGT 79


>SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)
          Length = 151

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 114 PPYKIADEKLAEWG--RKEIMLAEKEMPG 194
           PP+ +A  +L +WG  RKE++   ++MPG
Sbjct: 119 PPHNVAVTELKDWGQFRKEVVKWLEKMPG 147


>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 482 IERLSIREDQCLFNTPNILV 423
           +ER+ IRE+QC  +TPN  V
Sbjct: 165 VERIRIRENQCQTSTPNCKV 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,536
Number of Sequences: 59808
Number of extensions: 324684
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)