Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348...   165   1e-41
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    31   0.42 
12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507     27   9.1  
08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634           27   9.1  
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710...    27   9.1  

>03_02_0896 -
           12233706-12233801,12234005-12234181,12234741-12234854,
           12234928-12235006,12235372-12235533,12235957-12236079,
           12236139-12236218
          Length = 276

 Score =  165 bits (402), Expect = 1e-41
 Identities = 80/151 (52%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
 Frame = -3

Query: 519 GHICYFVTAPEEGNDSVVFTGDTLFLGGCGRFFEGTADQMYKALITILSSLPDHTKVFCG 340
           GHI Y+VT+ EE  D  VFTGDTLF+ GCGRFFEGTA+QMY++L   L SLP  T+V+CG
Sbjct: 126 GHISYYVTSKEE-EDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVYCG 184

Query: 339 HEYTLQNLKFAAHVEPTNENVKAKISWSQDRRNQGKPTVPSTIGEEKLYNPFMRV--TEL 166
           HEYT++NLKF   VEP NE VK K+ W+Q +R   +PT+PSTIGEE   N FMRV   E+
Sbjct: 185 HEYTVKNLKFILTVEPDNEKVKQKLEWAQKQREANQPTIPSTIGEEFETNTFMRVDLPEI 244

Query: 165 AV-----QNHTGKNDPIDTMKAIRLEKDTFK 88
            +     Q   G   P++ ++ +R  KD +K
Sbjct: 245 QIMPSILQAKFGAKSPVEALREVRKTKDNWK 275


>04_04_0827 -
           28457858-28458028,28458513-28458669,28458984-28459083,
           28459204-28459231,28459321-28459396,28461276-28461355,
           28461642-28461805,28461897-28462056,28462154-28462277,
           28462901-28463941,28464141-28464259,28464512-28464823,
           28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 333 YTLQNLKFAAHVEPTNENVKAKISWSQD----RRNQGKPTVPSTIGEEKLYNPFMRVTEL 166
           Y+L N  FAA VE   E     ++        RR +G+P +PS   +   YN    +T L
Sbjct: 167 YSLVNQAFAAAVEKVLEGYFCSLNTLPASIKLRRLEGQPDIPSMTPDGASYNSNSEITLL 226

Query: 165 AVQNHT 148
            V  HT
Sbjct: 227 EVYLHT 232


>12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507
          Length = 254

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 315 KFAAHVEPTNENVKAKISWS 256
           +F+A V PT E V   +SWS
Sbjct: 196 RFSAKVHPTGERVDGSLSWS 215


>08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634
          Length = 245

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 315 KFAAHVEPTNENVKAKISWS 256
           +F+A V PT E V   +SWS
Sbjct: 196 RFSAKVHPTGERVDGSLSWS 215


>07_03_1041 +
           23468867-23469215,23469231-23469348,23470920-23471041,
           23471074-23471532,23474675-23474949,23475179-23475315,
           23475353-23475405,23475456-23475516,23475606-23475707,
           23476380-23476488,23476568-23476693,23476986-23477037,
           23477236-23477317,23477395-23477488,23478166-23478262,
           23478605-23478698,23479458-23479530,23480198-23480371,
           23480526-23480648,23481396-23481533,23482270-23482446
          Length = 1004

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 435 CGRFFEGTADQMYKALITILSSLPDHTKVFCGHEYTL 325
           CG      A   ++A + + + L  HT++FC  E+ L
Sbjct: 745 CGPSGSELAPSTFEAFVKVPNVLRPHTQIFCTSEWVL 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,542,517
Number of Sequences: 37544
Number of extensions: 261172
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)