Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16)            79   2e-15
SB_18301| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               45   3e-05
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         30   1.3  
SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                28   5.4  
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         28   5.4  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              27   7.1  

>SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16)
          Length = 338

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = -3

Query: 519 GHICYFVTAPEEGNDSVVFTGDTLFLGGCGRFFEGTADQMYKALITILSSLPDHTKVFCG 340
           GHIC+ VT  + G  + VFTGDTLF GGCGRFFEG+  +MY ALI +L SLP++T+    
Sbjct: 231 GHICFHVTG-DAGKPTAVFTGDTLFSGGCGRFFEGSPPEMYSALIEVLGSLPENTEKRAH 289

Query: 339 HEYTL 325
           +E T+
Sbjct: 290 NEPTI 294



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = -3

Query: 252 DRRNQGKPTVPSTIGEEKLYNPFMRV 175
           ++R   +PT+PSTIGEE  +NPFMRV
Sbjct: 285 EKRAHNEPTIPSTIGEEFSFNPFMRV 310


>SB_18301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
 Frame = -3

Query: 339 HEYTLQNLKFAAHVEPTNENVKAKISWSQDRRNQGKPTVPSTIGEEKLYNPFMRVTELAV 160
           H+Y ++NL FA  +EP+N +++AK+ W  + RN    T PSTIGEEKLYNPF+R T LA+
Sbjct: 2   HDYAMKNLMFALTIEPSNYHLRAKMDWVVEMRNNKYMTSPSTIGEEKLYNPFLR-THLAI 60

Query: 159 ----QNHTGKND----PIDTMKAIRLEKDTFK 88
                  T  +D     +  +KA+R  K+ FK
Sbjct: 61  VGSAVGFTQDDDVNLRAVSVLKALRERKNNFK 92


>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
 Frame = -3

Query: 471 VVFTGDTLFLGGCGR--FFEGTADQMYKALITILSSLPDHTKVFCGHEYT 328
           + FTGD L +  CGR  F EG+A+++Y+++ + + SLP    ++ GH+YT
Sbjct: 450 MAFTGDALLIRACGRTDFQEGSAEKLYESVHSKILSLPRDFTLYPGHDYT 499


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 469  CLHRGYTLLRRMWQVL*RHGRSNVQSINNNSEQPA 365
            CLH+G  L  ++W VL R GR N  +I +  E  A
Sbjct: 1231 CLHKGPPLQNKIWGVLVR-GRFNTVAITDGEESDA 1264


>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 469 CLHRGYTLLRRMWQVL*RHGRSNVQSINNNSEQ 371
           CLH+G  L  ++W VL R GR N  +I  + ++
Sbjct: 636 CLHKGPPLQNKIWDVLVR-GRFNTVAITGDLQK 667


>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 469 CLHRGYTLLRRMWQVL*RHGRSNVQSINNNSEQ 371
           CLH+G  L  ++W VL R GR N  +I  + ++
Sbjct: 595 CLHKGPPLQNKIWDVLVR-GRFNTVAITGDLQK 626


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 469 CLHRGYTLLRRMWQVL*RHGRSNVQSINNNSEQ 371
           CLH+G  L  ++W VL R GR N  +I  + ++
Sbjct: 463 CLHKGPPLQNKIWDVLVR-GRFNTVAITGDLQK 494


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 248 LSCDQLILALTFSLVGST*AANF--KFCKVYSWPQNTLVWSG 367
           + C+Q        LVG++ A N   + C+ YS+P   L WSG
Sbjct: 319 MRCEQQTPGYQQPLVGNSTALNACKEHCEAYSFPVFVLKWSG 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,250,490
Number of Sequences: 59808
Number of extensions: 326234
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)