Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.079
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   0.97 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   9.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   9.0  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 207 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 377
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 518 AWPRSRLWFGWRGTFFILITG 456
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 279  FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQ 443
            + E +    T    +F +D S     DL       ++NV+ + L+SF+ ++E L+
Sbjct: 1703 YNEFYSQLDTSTSDIF-QDTSVDGFPDL---QVSSDINVRNDRLSSFVMSSEDLR 1753


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 235 NLPSAANVTSTRSPRDSRP*KPADI 161
           ++P+A   +ST S RD  P  P D+
Sbjct: 349 SIPAAEPASSTTSARDQTPSTPKDV 373


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 231 RLLQAHKLVLSVCSPYFQEMFKMNPTQHPIV 323
           R+ ++ K + +VCS  +Q +   +PT  P V
Sbjct: 156 RIAESGKCLCTVCSCLYQGIISHSPTFRPFV 186


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 366 VISLLVQND*HLLKILSDVVLDSF*TFLENRENILIELIYVLAITCLRQPTLRLRDLHAT 187
           V++L + N  H    +S V+       LEN +N L E  Y+  +    + + ++    AT
Sbjct: 144 VLNLGLMNQIHTFDEISGVITLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAAT 203

Query: 186 -AGHESLLTY 160
            AG   LL Y
Sbjct: 204 AAGGLRLLRY 213


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 132 SLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLV 257
           +L +NN H+N+ +G H  L+  +L + +   E  ++Q ++ +
Sbjct: 363 NLDYNNCHSNVWSGEHS-LTLSNLAEKSNLKEAEIIQGNRTI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,162
Number of Sequences: 5004
Number of extensions: 40653
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)