Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D05f
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 36 0.024
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_36777| Best HMM Match : VWA (HMM E-Value=0) 31 0.39
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 0.52
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 0.90
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 2.1
SB_41467| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.4) 28 3.6
SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6) 28 3.6
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 28 3.6
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 3.6
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 4.8
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052) 28 4.8
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 27 6.4
SB_6911| Best HMM Match : Ank (HMM E-Value=0) 27 6.4
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 27 8.4
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 27 8.4
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 35.5 bits (78), Expect = 0.024
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 99 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 227
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 400
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 35.5 bits (78), Expect = 0.024
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 99 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 227
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 367
>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1303
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 6 RHEEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 179
R + +YF Q + + + +Q + ++ + V TP P +PN V P P P
Sbjct: 1216 RKGDTSYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPNPVPQPAPAP 1273
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 117 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 221
P+G P +P PPGP P TF + H+ Q G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 307 HPCP--CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 432
HPCP C + T L P I P C+ + P H+ P+ +C+
Sbjct: 320 HPCPLPCFEECKPCTELLPKII-PECQHEQQVPCHIDPWEFKCS 362
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 302 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 439
+G + ++T P + +QST P A H RR ST R+ +++ S
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS 1138
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 322 RPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 432
+PYLRT TV P + + +L RT L P C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360
>SB_41467| Best HMM Match : Plasmodium_HRP (HMM E-Value=3.4)
Length = 225
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 401 STSARTSHNATRSRRDSGTRLCYARSARNT 490
++ RT+H A R++ SGT + R A NT
Sbjct: 102 TSGTRTTHFARRTQHTSGTHTTHFRDAHNT 131
>SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)
Length = 286
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 313 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTSLLRPFC 480
C RP+ R PP+ P R PLHL P T S+ L+ + L+RP+C
Sbjct: 181 CLVRPWCSARVRSSPPLASLDPGVR-QEYGPLHLLPRWTLVFGKSTVLFTSCLVRPWC 237
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 305 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 442
G R A+ Y ARS ++ +A AA R AR+ +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 114 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 218
+P G P PPA P + PP P P TF N + P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 120 VGTPQPPAIPNQVSPPGPIPTQ 185
+G+ PP +P +V PGPI Q
Sbjct: 49 MGSKGPPGVPGEVGKPGPIGYQ 70
>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
Length = 532
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +1
Query: 226 ESRNLAACPCRLSLIFH----RIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRT 393
++ ++ P R L +H + + Q H P R +L L PP ++ T
Sbjct: 175 QTYHVTLTPPRKHLTYHVTLTQPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLT 234
Query: 394 PP-LHLSPYITQCNPLSSRLWYTSLLRP 474
PP HL+ ++T P + ++ +L P
Sbjct: 235 PPRKHLTYHVTLTPPRKHQTYHVTLTPP 262
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 292 QGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPP-LHLSPYITQCNPLSSRLWYTSLL 468
Q H P R +L L PP ++ TPP HL+ ++T P + ++ +L
Sbjct: 227 QTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLT 286
Query: 469 RP 474
P
Sbjct: 287 PP 288
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 102 SEIDSPVGTPQPPAIPNQVSPPGPIP 179
S +P+ PPA+P +PP +P
Sbjct: 404 SRTQAPIAVHVPPAVPQHPAPPPAVP 429
>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
Length = 1961
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 250 PCRLSLIFHRIQSMQGLHRHPCPCRP 327
P +++ + R+ M+ LH+H PC P
Sbjct: 926 PMQIAAQYGRVSVMEVLHKHGAPCDP 951
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 129 PQPPAIPNQVSPPGPIP 179
PQPP +P+ +PP P P
Sbjct: 1167 PQPPPVPSVQAPPAPPP 1183
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 99 ESEIDSPVGTPQPPAIPNQVSPPGP 173
E +D P G PP P Q PPGP
Sbjct: 1047 EKGLDGPSG---PPGTPGQPGPPGP 1068
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = +1
Query: 157 YRHLDLSQLRLLPINIMYNYPGVESRNLAACPCRLS---LIFHRIQSMQGLHRHPCPCRP 327
YRH ++ LL Y +P + L PC L R + L P P
Sbjct: 1579 YRHPAITDTLLLQTPCYYRHPAITDTPLLQTPCYTDIPLLQTSRFTDIPLLQTSPYYRYP 1638
Query: 328 YLRTRTVLCPPIYRPRCRLSRTPPLHLSPY 417
+ +L P Y ++ T L SPY
Sbjct: 1639 TITDTLLLQTPSYYRHPAITDTLLLQTSPY 1668
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +3
Query: 12 EEHAYFAQQYPQQRPITEVIGSQ----NFFFLQESEIDSPVGTPQPPAIPNQVSPPGP 173
+EH A Q+ Q+ +I +Q N S + P G P P +P PGP
Sbjct: 139 KEHDAMAVQFKIQKHRITLIETQLKDINHTVRNTSRLPGPQGPPGPQGLPGPQGVPGP 196
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 293 RVCTGTRAHAA-RTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 439
R GT + ++ ++ P RSS ST RPS++++ S++ TRS
Sbjct: 19 RAKKGTSSTSSPKSSRPGRSSLASSTDSITQTSNARPSSASKPSNSRTRS 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,439
Number of Sequences: 59808
Number of extensions: 289580
Number of successful extensions: 1493
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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