Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 230 6e-61
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 0.76
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.0
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 1.3
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 1.8
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 1.8
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 2.3
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 3.1
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 29 3.1
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.1
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 4.1
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 4.1
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16) 27 7.1
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 27 7.1
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 27 9.4
SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43) 27 9.4
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14) 27 9.4
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14) 27 9.4
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 27 9.4
SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 27 9.4
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 27 9.4
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 230 bits (562), Expect = 6e-61
Identities = 117/143 (81%), Positives = 127/143 (88%)
Frame = +2
Query: 74 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 253
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 254 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQ 433
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQ
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 434 QPRLFVGMILILIXAEVXGLYGL 502
QPRLFVGMILILI AEV GLYGL
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGL 145
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.44
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 344 GAGLAVGFSGLAAGFAIGIVG 406
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 226 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 333
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 465 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 343
++I+P N + PR P + T P P P PT P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 391 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 260
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 391 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 260
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -1
Query: 425 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 255
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 410 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 276
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 414 PASPTMPMAKPAARPENPTAKPAPK 340
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 414 PASPTMPMAKPAARPENPTAKPA 346
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 226 HSCRHGGYYCHLRSGRGCPDCW 291
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 414 PASPTMPMAKPAARPENPTAKPAPK 340
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 414 PASPTMPMAKPAARPENPTAKPA 346
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 453 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 343
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 78 IQSTDPSLELWGRRLLSSSAPWELPMEL 161
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -3
Query: 426 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 328
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 450 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRT 277
+NN G A P TPA+ +P+A P+ A P T PAP + P A + ++
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPPPPYRTTAKPFPKMSLTP 278
Query: 276 ATTRP*MAIIPAMTTGMIDFMISS 205
+P + P +T ++ ++ S
Sbjct: 279 TPKKPPVPKKPVLTPAQLEGLLKS 302
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1404
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 131 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 298
+S + A G + G+ ++V+ + + +I V+ IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840
>SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)
Length = 560
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPA 346
TPA PT+P A A E P PA
Sbjct: 448 TPALPTIPQAPSGAPAETPPVAPA 471
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 286 NQDSHDQTVDGNNTRHDDRNDRLHDQL 206
N D+ D D NN DD ND +D +
Sbjct: 140 NDDNDDNNNDSNNNSDDDGNDDTNDYI 166
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 423 PRTPASPTMPMAKPAARPE--NPTAKPAPKWMNP 328
P+TP+ P+ + PE PT +P+PK +P
Sbjct: 51 PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSP 84
>SB_53363| Best HMM Match : Peptidase_S15 (HMM E-Value=1.49939e-43)
Length = 461
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +1
Query: 286 CWCPPGASQLPPLQRVHPLGCWFGCRI 366
CW G + P + V + WFGC +
Sbjct: 229 CWPANGVTPGPAIDHVEVMRQWFGCHL 255
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +1
Query: 25 FLGPVNTPTFNKQNG*K*S--NLRTLLWSYGGGVCYHLQRLGSCLWNCQVRNWYCRHVGD 198
+LG + P N+ NG + N +L GG C + + C CR G
Sbjct: 685 YLGKESRPKINRTNGTRVGCGNACAVLKCRNGGKCVNRIIVAEC---------DCRGTGH 735
Query: 199 EA*ADHEVDHSCRHGGY 249
+H DH+CRH Y
Sbjct: 736 ---TNHSADHNCRHLTY 749
>SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 661
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+P A A + P PA PL
Sbjct: 604 TPALPTIPQAPSGAPAKTPFVAPAAPSPRPL 634
>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
Length = 1447
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 417 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 325
TPA PT+P A A + P PA PL
Sbjct: 1390 TPALPTIPQAPSGAPAKTPFVAPAAPSPRPL 1420
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 453 PTNNLGC*AVP-RTPASPTMPMAKPAARPENPTAKPAPKWMNP 328
PT+ A+P +PASP+ A P+ P +P+ PA P
Sbjct: 719 PTSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSYTP 761
>SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 304
Score = 27.1 bits (57), Expect = 9.4
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = +2
Query: 44 LPHLTNKMAENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKS 223
LP T + E++ F+ + ++A++ G ++ T + + +++ RP + S
Sbjct: 88 LPLFTGFLLEHSLFKSCFYYGLTLSTALL--TCGVSFATIVAISCERYLALFRPFTYL-S 144
Query: 224 IIPVVMAGI-IAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAV 361
++ V G IAI ++ +V++A + A+Y Y L G+AV
Sbjct: 145 LVTVPRVGCAIAISWILSSVIVATFVFSSASYASYVLLFLLACGIAV 191
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 298 EGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHH 194
E D HD+ R DDR DR +D RP H
Sbjct: 1857 EADRRGDRHDERRPMPE-RKDDRRDRRYDDRRPEH 1890
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,368
Number of Sequences: 59808
Number of extensions: 389201
Number of successful extensions: 1557
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -