Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 158 4e-40
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 154 7e-39
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.32
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 0.97
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.3
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 1.7
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 3.0
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.0
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 6.8
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 25 6.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 9.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 9.0
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 158 bits (384), Expect = 4e-40
Identities = 80/163 (49%), Positives = 111/163 (68%), Gaps = 2/163 (1%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLAR-- 176
RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 11 RKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALT 70
Query: 177 HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 356
K + EG V+VGTVT+D RL +PK++VAAL T+ ARARIL AGGE+LT DQLAL
Sbjct: 71 SRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLAL 130
Query: 357 RAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
RAPTG TVL++G+++AREA RHFG P H PYVR++G
Sbjct: 131 RAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEG 170
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 154 bits (374), Expect = 7e-39
Identities = 77/163 (47%), Positives = 110/163 (67%), Gaps = 2/163 (1%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLAR-- 176
+K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 11 KKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALT 70
Query: 177 HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 356
K + + VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGGE+LT DQLAL
Sbjct: 71 SRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLAL 130
Query: 357 RAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
RAPTG TVLV+G+++AREA RHFG P H PYVR++G
Sbjct: 131 RAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEG 170
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.32
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 204 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 380
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 381 VLVQGQRNAREAVRHFGPAPG 443
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 237 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 350
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 338 SKNFSSSSQNACTSFFGNMKSSHRH 264
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 316 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 456
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 335 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 222
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -1
Query: 470 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 306
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 305 CTSFF 291
C+SFF
Sbjct: 364 CSSFF 368
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 17 HRS*ISRYLLEVTCKALQILGQTYKCQIQSDR--STPAFYEPYQPATNLCVSFGAPHEEA 190
HRS I YL + C L +G + I + R + F + + T L V F + A
Sbjct: 105 HRSPIHEYLKLIVCSPLYFMGILEETDIVNVRLFESETFAKSFNSITTLSVRFSVKNTPA 164
Query: 191 NS 196
+
Sbjct: 165 QA 166
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 342 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 437
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 410 TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC 231
+S S + + + +S ST S + S + SSSS+ A +S + SSH+ S
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPV 419
Query: 230 DCPHYHGNQTLTS 192
YH + + S
Sbjct: 420 SSAFYHNSTSSRS 432
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 376 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 465
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 391 KVSEMLVRQCVTLALLQEHRALTLNPMFAPRGHEKARPSR 510
+V EML+ Q LAL + R++T+ +F H++A+ +R
Sbjct: 42 QVMEMLI-QANELALRRGSRSITVEDLFFLIRHDRAKVNR 80
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = -1
Query: 377 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 198
L+A ST S K S + F K S RYL Q IC+ P + +L
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112
Query: 197 T 195
+
Sbjct: 113 S 113
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 369 GKKTVLVQGQRNAREAVRHFGPAPGA-PR 452
G+ L Q +R V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 518 LARRLGLAFSCPLGANIGFSVR 453
LA+R+ C LG +G+S+R
Sbjct: 157 LAKRVAAEQGCRLGEQVGYSIR 178
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 327 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 419
E+L D +L P+GK T LV + + +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,758
Number of Sequences: 5004
Number of extensions: 47353
Number of successful extensions: 164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -