Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302D02f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 199 4e-51
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 199 4e-51
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 199 4e-51
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 199 4e-51
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 197 2e-50
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 185 7e-47
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.46
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.46
AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens ... 32 1.4
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 4.3
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 4.3
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 4.3
BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein. 29 7.5
AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 7.5
AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 7.5
AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+... 29 7.5
AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein. 29 7.5
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 199 bits (486), Expect = 4e-51
Identities = 98/161 (60%), Positives = 116/161 (72%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 182
RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R M
Sbjct: 11 RKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM 70
Query: 183 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 362
K P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +
Sbjct: 71 KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 130
Query: 363 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 131 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 199 bits (486), Expect = 4e-51
Identities = 98/161 (60%), Positives = 116/161 (72%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 182
RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R M
Sbjct: 11 RKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM 70
Query: 183 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 362
K P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +
Sbjct: 71 KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 130
Query: 363 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 131 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 199 bits (486), Expect = 4e-51
Identities = 98/161 (60%), Positives = 116/161 (72%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 182
RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R M
Sbjct: 11 RKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM 70
Query: 183 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 362
K P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +
Sbjct: 71 KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 130
Query: 363 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 131 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 199 bits (486), Expect = 4e-51
Identities = 98/161 (60%), Positives = 116/161 (72%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 182
RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R M
Sbjct: 11 RKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKM 70
Query: 183 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 362
K P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +
Sbjct: 71 KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 130
Query: 363 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 131 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 197 bits (481), Expect = 2e-50
Identities = 97/161 (60%), Positives = 115/161 (71%)
Frame = +3
Query: 3 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 182
RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +SR+ R M
Sbjct: 11 RKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLSRMIRKM 70
Query: 183 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 362
K P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +
Sbjct: 71 KLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 130
Query: 363 PTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 485
P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 131 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 185 bits (451), Expect = 7e-47
Identities = 87/133 (65%), Positives = 105/133 (78%)
Frame = +3
Query: 87 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 266
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 267 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 446
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 447 PRSHTKPYVRTKG 485
P SHTKPYVR+KG
Sbjct: 136 PHSHTKPYVRSKG 148
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +2
Query: 209 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 388
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 389 TRSAKCS 409
T S CS
Sbjct: 83 TSSTPCS 89
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.46
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +2
Query: 209 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 388
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 389 TRSAKCS 409
T S CS
Sbjct: 83 TSSTPCS 89
>AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens
cDNA FLJ20279 fis, clone HEP03229. ).
Length = 308
Score = 31.9 bits (69), Expect = 1.4
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 355 FVLRLARRQYWYKVSEMLVRQCVTLALLQEH-RALTLNPMFAPRGH 489
FV+ L + +WY V ++ C+ + L H R + +P P+G+
Sbjct: 67 FVMLLPSKDFWYSVVNGVIFNCLAVLALSSHLRTMLTDPGAVPKGN 112
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 299 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 177
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 299 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 177
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 299 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 177
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein.
Length = 1069
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 434
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 435 AP-GAPRSHTKPYVRTK 482
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger protein.
Length = 1099
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 434
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 435 AP-GAPRSHTKPYVRTK 482
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger splice variant protein.
Length = 1099
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 434
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 435 AP-GAPRSHTKPYVRTK 482
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+
exchanger protein.
Length = 1081
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 434
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 435 AP-GAPRSHTKPYVRTK 482
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein.
Length = 988
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 434
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 117 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 171
Query: 435 AP-GAPRSHTKPYVRTK 482
P G +S++ VR K
Sbjct: 172 TPRGEMKSYSPTQVREK 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,557,816
Number of Sequences: 237096
Number of extensions: 1960377
Number of successful extensions: 4565
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4560
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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