Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302D01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)             168   2e-42
SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)                77   1e-14
SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)                  29   3.1  
SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)                       28   4.1  
SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)                       28   4.1  
SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)                       28   4.1  
SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13)                28   4.1  
SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_46318| Best HMM Match : DUF947 (HMM E-Value=1.9)                    27   9.4  

>SB_22379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score =  168 bits (409), Expect = 2e-42
 Identities = 75/103 (72%), Positives = 86/103 (83%)
 Frame = +2

Query: 140 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCHIRGKLRKKVWINQGDIILIGLRDYQ 319
           L+    G+EYAQV KMLGNGRLEA+CFDG+KRLCHIRGKLRKKVWIN GDIIL+GLRDYQ
Sbjct: 96  LINDRQGEEYAQVVKMLGNGRLEALCFDGMKRLCHIRGKLRKKVWINTGDIILLGLRDYQ 155

Query: 320 DAKADVILKYTPDEARNLKTYGEFPETVRINETVVYSVDGLDE 448
           D KADVIL+Y PDEARNLK YGE PE  +IN+T ++  +  DE
Sbjct: 156 DTKADVILRYNPDEARNLKAYGELPENAKINDTNMFGPEEEDE 198


>SB_11333| Best HMM Match : eIF-1a (HMM E-Value=4.1e-05)
          Length = 72

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +2

Query: 278 NQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPE 397
           N+GDIIL+GLRDYQD KADVIL+Y PDEARNLK YGE PE
Sbjct: 31  NKGDIILLGLRDYQDTKADVILRYNPDEARNLKAYGELPE 70


>SB_3873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           + KV++EK  GEE  K  ++N+    ++ + ++ KS+R   M
Sbjct: 80  RKKVEQEKAKGEEIRKRAMENLEDMKKREESASKKSRRSGAM 121


>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
          Length = 456

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 63  TCRKTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVMAAWRPCALMASNACV 242
           T R   V E+ I    RT++++  +     + D+  P    C V+ A  PC L     C 
Sbjct: 276 TARVYGVCEDLIRNRRRTRVQM--IFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCY 333

Query: 243 TS 248
           TS
Sbjct: 334 TS 335


>SB_58556| Best HMM Match : 4F5 (HMM E-Value=5.7)
          Length = 215

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 97  KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 138


>SB_39149| Best HMM Match : 4F5 (HMM E-Value=1.2)
          Length = 148

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 30  KKKVEQEKARGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 71


>SB_37404| Best HMM Match : 4F5 (HMM E-Value=5.7)
          Length = 123

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 5   KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 46


>SB_13854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 316 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 357


>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 215 TWPPSGHYRASL*LGRTLVRLP*RPTH 135
           TWP    Y+A   LG T + LP  P+H
Sbjct: 106 TWPSPADYQARPTLGNTHITLPQSPSH 132


>SB_13429| Best HMM Match : Vicilin_N (HMM E-Value=0.13)
          Length = 323

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 119 KKKVEQEKAKGEEIRKRAMEKLGDTKKREESASKKSRRSGSM 160


>SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = +2

Query: 242 HIRGKLRKKVWINQGDIILIGLRDYQDAKADVILKYTPDEARNLKTYGEFPETVRINETV 421
           HI G+   K  +N G  I I ++D   A A+ + +  P       T  +       ++  
Sbjct: 75  HIHGEESNKFTLNDGHTITIAIQDTPRATAEHLGQVLPGHEAATHTLADIIHNDTSHDDD 134

Query: 422 VYSVDGLDEDIEFG 463
           + SV   D  ++ G
Sbjct: 135 MLSVQSTDGTLDLG 148


>SB_46318| Best HMM Match : DUF947 (HMM E-Value=1.9)
          Length = 215

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 72  KTKVKEEKIGGEERTKMKLKNVSWSLRKTDKSTPKSQRCSVM 197
           K KV++EK  GEE  K  ++ +  + ++ + ++ KS+R   M
Sbjct: 97  KKKVEQEKAKGEEIRKRAMEKLGDTKKREEFASKKSRRSGSM 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,377
Number of Sequences: 59808
Number of extensions: 236027
Number of successful extensions: 684
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)