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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...   185   3e-48
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    30   0.24 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   0.73 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   0.97 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   2.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    26   3.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.9  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    26   3.9  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   5.2  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   6.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   6.8  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.0  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   9.0  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   9.0  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.0  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
            Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score =  185 bits (451), Expect = 3e-48
 Identities = 86/170 (50%), Positives = 121/170 (71%)
 Frame = +1

Query: 4    GVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPE 183
            G   TK P ++ +R IKKE L L+ ++++R+ D  +V    IP L +AVLLDY +  VP+
Sbjct: 737  GNIATKTPHVRGLRTIKKEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQN-VPD 795

Query: 184  AREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQA 363
            AR+ EVL+ +  IV++L   +T ++P + DAVF CTLEMI+KDF EYPEHR  FF LL+A
Sbjct: 796  ARDAEVLNLITTIVNQLSELLTDKIPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQLLRA 855

Query: 364  VNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 513
            +N NCF A L+IP  QFKLV++SI+W+FKH  R++ +TGL IL  L+ N+
Sbjct: 856  INLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLNILLELINNM 905


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
 Frame = +1

Query: 190 EPEVLSCMAAIVHRLEGH-ITSEVPKIFDAVFECTLEMINKDFEEYPEHRTE-------- 342
           E  ++SC+  ++HR+ G  IT    K+FD   E       + F+ + +H T+        
Sbjct: 98  EASLISCLRWLLHRIPGGVITWSTYKLFDEA-ETRANYPVRGFDIFMKHATKHSCHFNIL 156

Query: 343 --FFLLLQAVNTNCFKAFLSIPPAQFKLVLD-SIIWAFKHTMRNVADT 477
             F  LL +++     +  S   +  +LV   + IWAF   M N+ +T
Sbjct: 157 KCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQET 204


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 389  NALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTS 252
            N +++ VL A  ++K  ++ S    K L  ISR+++K  S +FG S
Sbjct: 994  NTIEERVL-ALQDRKRELIDSALGEKGLREISRLNTKELSFLFGMS 1038


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 506 NNSRYNICK-PVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSV 336
           N SRY + K P+    L++       + K+N N   G L   L Q  LT  S +K+ V
Sbjct: 733 NASRYVVSKRPIPLDLLVLSPKMDDFQLKSNTNKFLGSLAGNLPQESLTTKSKRKSKV 790


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -1

Query: 320 SSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRASGTAVLW*SKSTAS 141
           +S S L  S V S ++S    +S  +  SSL T +    S+S S  S +     S STAS
Sbjct: 205 TSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS 264



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 28/113 (24%), Positives = 50/113 (44%)
 Frame = -1

Query: 518 SSTFNNSRYNICKPVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNS 339
           SS+ ++S      P S++  I   ++    S  +   +     ++    V ++ S+  +S
Sbjct: 323 SSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTV-SSSSSTSSS 381

Query: 338 VLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRAS 180
            L S  SS S    S  HS + S+   +S     S+  + A   +STS SR+S
Sbjct: 382 TLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS-SRSS 433


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 71  LFQVGLHARLITVWFWKTLFHLFSMLCFWITKGLLFLKLVSLKYCLAW 214
           +F+V LH   I V+     F +   +C     GLL L L+   + L W
Sbjct: 28  IFEVFLHFLKIPVYMTHLGFPITPTVCLIEMLGLLLLLLIPALFTLIW 75


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -3

Query: 387 CFETVCIDRLQ**EKFCSMFWIL-FKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCH 211
           C+ET     +   E+   +F IL   V  N    +F D +  F      M   +V++C  
Sbjct: 61  CYETARKSEIGLEERLKCLFAILDLLVIGNEINESFCDHLLPFLILEELMDIHTVNECAK 120

Query: 210 ARQYF 196
             +YF
Sbjct: 121 LYEYF 125


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 196  EVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMI--NKDFEEYPEHRTEFFL-LLQAV 366
            ++L CM+  V R+EG  TS   KIF  + +   E+I  +  F+ Y        L + + V
Sbjct: 1184 DILCCMSDFVSRVEGENTS---KIFTEISKFVREIISSSNSFKNYLLVCLRMLLEVAKNV 1240

Query: 367  NTNC 378
            NT C
Sbjct: 1241 NTYC 1244


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 289 TLEMINKDFEEYPEHRTEFF-LLLQAVNTNCFKAFLSIPP 405
           T+   N+DF+EY   R+EF+  LL AV+        SIPP
Sbjct: 219 TVYHFNEDFKEYGASRSEFYPYLLAAVSDR--GEHHSIPP 256


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 249 SYMSFKSVHDCCHARQYF-RLTSFRNSSPLVIQKHSIEKRWNKVF 118
           SY+ F S+   CH   YF R+    + +  V   H  E   N+V+
Sbjct: 147 SYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVY 191


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 432 HNLGI*TYNEECGRYRFTNIVPTVVKC*G 518
           H +GI T  E C     TN +PTV++  G
Sbjct: 505 HGIGIFTAKEICENNTITNELPTVLRSVG 533


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 395 LKNALK-QFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCT 222
           +K ALK + +L+  + K  S L S     + +I  R+   TAS I  +  VICP    T
Sbjct: 99  MKEALKGKLILSILAGKTISSLQSMLDESTRVI--RIMPNTASRIRESMSVICPGPNAT 155


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 133  PLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAV 279
            PLLD V+     TAVPE+ +PE +S +   +  +E  + S++ ++ + +
Sbjct: 965  PLLDQVIA----TAVPESSDPEAVSIVVKAL--MEVDLPSQLIELLEKI 1007


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/72 (15%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 179 LKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFS-YY 355
           ++ ++ +Y + W+ S  D+K++ +   + +    +  +W     +      ++QN   ++
Sbjct: 532 IQKIAKQYLIKWRISLLDIKELSIRAEKLHTTNEIIGVWNQWVVSYNRKVGMQQNADLFF 591

Query: 356 CRRSIQTVSKHF 391
            R++++ V +H+
Sbjct: 592 KRKTLRVVFEHW 603


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 339 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRL 190
           C  F I   +F++ + S       +F+YF  +  F  +    H   +FRL
Sbjct: 88  CRRFHIA--IFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 124 SFPKPYCYQSSV*P 83
           ++P PYC+QS V P
Sbjct: 188 NYPPPYCFQSPVSP 201


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 262  LVLQKLYVLQVCARLLPCKTVLQAHELQEQQS 167
            L+  KL   +VC +L   K  LQ H++   QS
Sbjct: 1600 LLDSKLSFAEVCGQLQRLKETLQEHQMTSVQS 1631


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 244 ITSEVPKIFDAVFECTLEMINKDFEE 321
           +   V  IF+AV +CT + + +++E+
Sbjct: 730 VPDTVKNIFEAVRKCTFDTLEEEYEK 755


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 360 GGQYKLFQSIFEHTTSTIQVGFRFHNLGI 446
           G    LFQS+FE     +Q+ F F  + +
Sbjct: 124 GTSRNLFQSVFEEADRQLQLSFGFRLVAV 152


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 151 LLDYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFE 285
           L+D+  + + E RE  +    A  +  L+ H   ++PK+ +  FE
Sbjct: 407 LMDFCCSILIELRESILERNFADSIKLLQAHFNVDMPKLLNLTFE 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,224
Number of Sequences: 5004
Number of extensions: 50868
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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