Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 185 3e-48
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 30 0.24
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 0.73
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 0.97
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 27 2.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.2
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 26 3.0
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.0
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 3.9
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 26 3.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 5.2
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 6.8
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.0
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 25 9.0
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 25 9.0
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 185 bits (451), Expect = 3e-48
Identities = 86/170 (50%), Positives = 121/170 (71%)
Frame = +1
Query: 4 GVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPE 183
G TK P ++ +R IKKE L L+ ++++R+ D +V IP L +AVLLDY + VP+
Sbjct: 737 GNIATKTPHVRGLRTIKKEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQN-VPD 795
Query: 184 AREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQA 363
AR+ EVL+ + IV++L +T ++P + DAVF CTLEMI+KDF EYPEHR FF LL+A
Sbjct: 796 ARDAEVLNLITTIVNQLSELLTDKIPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQLLRA 855
Query: 364 VNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 513
+N NCF A L+IP QFKLV++SI+W+FKH R++ +TGL IL L+ N+
Sbjct: 856 INLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLNILLELINNM 905
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 29.9 bits (64), Expect = 0.24
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Frame = +1
Query: 190 EPEVLSCMAAIVHRLEGH-ITSEVPKIFDAVFECTLEMINKDFEEYPEHRTE-------- 342
E ++SC+ ++HR+ G IT K+FD E + F+ + +H T+
Sbjct: 98 EASLISCLRWLLHRIPGGVITWSTYKLFDEA-ETRANYPVRGFDIFMKHATKHSCHFNIL 156
Query: 343 --FFLLLQAVNTNCFKAFLSIPPAQFKLVLD-SIIWAFKHTMRNVADT 477
F LL +++ + S + +LV + IWAF M N+ +T
Sbjct: 157 KCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQET 204
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -1
Query: 389 NALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTS 252
N +++ VL A ++K ++ S K L ISR+++K S +FG S
Sbjct: 994 NTIEERVL-ALQDRKRELIDSALGEKGLREISRLNTKELSFLFGMS 1038
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 506 NNSRYNICK-PVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSV 336
N SRY + K P+ L++ + K+N N G L L Q LT S +K+ V
Sbjct: 733 NASRYVVSKRPIPLDLLVLSPKMDDFQLKSNTNKFLGSLAGNLPQESLTTKSKRKSKV 790
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -1
Query: 320 SSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRASGTAVLW*SKSTAS 141
+S S L S V S ++S +S + SSL T + S+S S S + S STAS
Sbjct: 205 TSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTAS 264
Score = 24.6 bits (51), Expect = 9.0
Identities = 28/113 (24%), Positives = 50/113 (44%)
Frame = -1
Query: 518 SSTFNNSRYNICKPVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNS 339
SS+ ++S P S++ I ++ S + + ++ V ++ S+ +S
Sbjct: 323 SSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTV-SSSSSTSSS 381
Query: 338 VLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRAS 180
L S SS S S HS + S+ +S S+ + A +STS SR+S
Sbjct: 382 TLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTS-SRSS 433
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 71 LFQVGLHARLITVWFWKTLFHLFSMLCFWITKGLLFLKLVSLKYCLAW 214
+F+V LH I V+ F + +C GLL L L+ + L W
Sbjct: 28 IFEVFLHFLKIPVYMTHLGFPITPTVCLIEMLGLLLLLLIPALFTLIW 75
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -3
Query: 387 CFETVCIDRLQ**EKFCSMFWIL-FKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCH 211
C+ET + E+ +F IL V N +F D + F M +V++C
Sbjct: 61 CYETARKSEIGLEERLKCLFAILDLLVIGNEINESFCDHLLPFLILEELMDIHTVNECAK 120
Query: 210 ARQYF 196
+YF
Sbjct: 121 LYEYF 125
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 196 EVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMI--NKDFEEYPEHRTEFFL-LLQAV 366
++L CM+ V R+EG TS KIF + + E+I + F+ Y L + + V
Sbjct: 1184 DILCCMSDFVSRVEGENTS---KIFTEISKFVREIISSSNSFKNYLLVCLRMLLEVAKNV 1240
Query: 367 NTNC 378
NT C
Sbjct: 1241 NTYC 1244
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 289 TLEMINKDFEEYPEHRTEFF-LLLQAVNTNCFKAFLSIPP 405
T+ N+DF+EY R+EF+ LL AV+ SIPP
Sbjct: 219 TVYHFNEDFKEYGASRSEFYPYLLAAVSDR--GEHHSIPP 256
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 249 SYMSFKSVHDCCHARQYF-RLTSFRNSSPLVIQKHSIEKRWNKVF 118
SY+ F S+ CH YF R+ + + V H E N+V+
Sbjct: 147 SYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVY 191
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 432 HNLGI*TYNEECGRYRFTNIVPTVVKC*G 518
H +GI T E C TN +PTV++ G
Sbjct: 505 HGIGIFTAKEICENNTITNELPTVLRSVG 533
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 395 LKNALK-QFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCT 222
+K ALK + +L+ + K S L S + +I R+ TAS I + VICP T
Sbjct: 99 MKEALKGKLILSILAGKTISSLQSMLDESTRVI--RIMPNTASRIRESMSVICPGPNAT 155
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 133 PLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAV 279
PLLD V+ TAVPE+ +PE +S + + +E + S++ ++ + +
Sbjct: 965 PLLDQVIA----TAVPESSDPEAVSIVVKAL--MEVDLPSQLIELLEKI 1007
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/72 (15%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 179 LKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFS-YY 355
++ ++ +Y + W+ S D+K++ + + + + +W + ++QN ++
Sbjct: 532 IQKIAKQYLIKWRISLLDIKELSIRAEKLHTTNEIIGVWNQWVVSYNRKVGMQQNADLFF 591
Query: 356 CRRSIQTVSKHF 391
R++++ V +H+
Sbjct: 592 KRKTLRVVFEHW 603
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 339 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRL 190
C F I +F++ + S +F+YF + F + H +FRL
Sbjct: 88 CRRFHIA--IFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 124 SFPKPYCYQSSV*P 83
++P PYC+QS V P
Sbjct: 188 NYPPPYCFQSPVSP 201
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 262 LVLQKLYVLQVCARLLPCKTVLQAHELQEQQS 167
L+ KL +VC +L K LQ H++ QS
Sbjct: 1600 LLDSKLSFAEVCGQLQRLKETLQEHQMTSVQS 1631
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 244 ITSEVPKIFDAVFECTLEMINKDFEE 321
+ V IF+AV +CT + + +++E+
Sbjct: 730 VPDTVKNIFEAVRKCTFDTLEEEYEK 755
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 360 GGQYKLFQSIFEHTTSTIQVGFRFHNLGI 446
G LFQS+FE +Q+ F F + +
Sbjct: 124 GTSRNLFQSVFEEADRQLQLSFGFRLVAV 152
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 151 LLDYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFE 285
L+D+ + + E RE + A + L+ H ++PK+ + FE
Sbjct: 407 LMDFCCSILIELRESILERNFADSIKLLQAHFNVDMPKLLNLTFE 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,224
Number of Sequences: 5004
Number of extensions: 50868
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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