Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 32 0.32
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 31 0.56
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 0.98
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 29 1.7
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 2.3
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391... 28 5.2
05_05_0191 + 23127068-23127331,23127514-23127546 27 6.9
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 27 9.1
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 259 PKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQFKLVLD 429
P + D V E ++NK + P+ F L F L +PP Q ++ L+
Sbjct: 1156 PALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPRSFDVILQLPPPQLEIALN 1212
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 299 ISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRASGT 174
+S ++ N G +V+CP+ LCT AM +++ RA G+
Sbjct: 308 LSTPRTERCPNCSGAGKVMCPTCLCTGMAMANNSIDRRAWGS 349
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -1
Query: 353 NKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPS-SLCTIAAMQDSTSGSRASG 177
++++++ SG+S+ LLI ++ A+ + GTS P+ S + +D+ G+ + G
Sbjct: 423 SQQSTIPLSGFSANGLLIHGSFNNTCANKLGGTSSSCAPARSSNDLMVARDTKGGASSFG 482
Query: 176 TAVL 165
A+L
Sbjct: 483 GAML 486
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 157 DYQRTAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYP 327
+++ +VP+ EP+V ++ +E I + D V E T+E +KD E P
Sbjct: 503 EHEVQSVPDVEEPDVALPDVQVLSSIEPTIHEDPNPTRDPVEETTVEATDKDKSEVP 559
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 339 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSV 226
C++++ ++ + F S F +YFW + +FK V
Sbjct: 189 CNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKV 226
>04_04_1054 +
30437468-30437763,30438647-30438779,30439099-30439159,
30439370-30439483,30439813-30439971,30440124-30440206,
30440423-30440549,30440872-30440951,30441027-30441113,
30441316-30441440,30441543-30441603,30441806-30441859,
30441946-30442023,30442449-30442554,30442655-30442803,
30442945-30443052
Length = 606
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 446 NAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLII 297
+ + +E+ TNL+ G + NA+ + +L +K + L SG S+ L I
Sbjct: 345 DVETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQNALLSGCSAGGLAAI 394
>05_05_0191 + 23127068-23127331,23127514-23127546
Length = 98
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 181 EAREPEVLSCMAAIVHRLEGHITSEVPKIFDA 276
EA+E EVL CM R H E ++++A
Sbjct: 7 EAKEMEVLECMGQAARRPGSHGKDEAQRVWEA 38
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 339 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSV 226
C+++ ++ +F S F +YFW + +FK V
Sbjct: 735 CNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKV 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,825
Number of Sequences: 37544
Number of extensions: 287048
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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