BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302C12f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 242 1e-64 SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43) 30 1.3 SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 28 5.4 SB_24522| Best HMM Match : DS (HMM E-Value=0) 28 5.4 SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_18221| Best HMM Match : HHH (HMM E-Value=0.65) 27 7.1 SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 27 9.4 >SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 708 Score = 242 bits (593), Expect = 1e-64 Identities = 116/171 (67%), Positives = 137/171 (80%) Frame = +1 Query: 1 NGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVP 180 NG V KQPLI+ MR +K E L LIS+WV++S D +V +NFIPPLLDAVL DYQR VP Sbjct: 414 NGELVMKQPLIRAMRTVKTEVLRLISTWVSKSNDPKLVCDNFIPPLLDAVLGDYQRN-VP 472 Query: 181 EAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQ 360 AREPEVLS MA +++LE ++T VP+IFDAVFECTL MINKDFEE+PEHRT FFLLLQ Sbjct: 473 GAREPEVLSTMATFINKLEANVTENVPQIFDAVFECTLNMINKDFEEFPEHRTNFFLLLQ 532 Query: 361 AVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 513 AV +CF+A L IPP QFKLVLDSI+WAFKHTMRNVADTGL + +L ++ Sbjct: 533 AVVQHCFQALLKIPPEQFKLVLDSIVWAFKHTMRNVADTGLTMHATILAHM 583 >SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43) Length = 636 Score = 29.9 bits (64), Expect = 1.3 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Frame = -2 Query: 301 SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKT----VLQAHELQEQQSFGNPKAQHREE 134 S PE+ RL I+ LQ+ V+ +C R+ P K +L H Q FG Q R + Sbjct: 315 SHPEHPGRLQSIWARLQETGVVNMCDRVRPRKATLAEILSVHSEQHTMLFGG-STQCRTK 373 Query: 133 VE 128 E Sbjct: 374 AE 375 >SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) Length = 721 Score = 27.9 bits (59), Expect = 5.4 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +1 Query: 79 SWVTRSIDNSMVLENFIPPLLD-AVLLDYQRTAVPEAREPEVL--SCMAAIVHRLEG-HI 246 S V + NS + E ++PPLL A + + P+A+ ++L S + +EG + Sbjct: 491 STVISDLYNSSLREGYLPPLLKRATVCPLPKQKPPKAKVSDILPISLTCQVAKLMEGLTL 550 Query: 247 TSEVPKIFDAVFECTLEMINKDFEE 321 + +P I D + + K E+ Sbjct: 551 SRALPNILDRLDRNQFAVAGKSTEQ 575 >SB_24522| Best HMM Match : DS (HMM E-Value=0) Length = 340 Score = 27.9 bits (59), Expect = 5.4 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +1 Query: 49 IKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAV 177 ++K+ +N I + + + DN LE+FI P+LD +L + Q + Sbjct: 158 LRKKGINRIGNLLVPN-DNYCKLEDFIQPVLDKMLEEQQNEGI 199 >SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 493 Score = 27.9 bits (59), Expect = 5.4 Identities = 21/89 (23%), Positives = 38/89 (42%) Frame = +1 Query: 55 KETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRL 234 K T+ +++ + D+ L + L+ Y+R VPE+ L +VHR Sbjct: 394 KSTMTMLAPDTIVTSDDETALAAW-NELVSKAKYQYKRVVVPESFAANCLFINGTVVHRP 452 Query: 235 EGHITSEVPKIFDAVFECTLEMINKDFEE 321 E I P I+ + + +EM +F + Sbjct: 453 EKEIPKSYP-IYKGLKDPKVEMEISEFHK 480 >SB_18221| Best HMM Match : HHH (HMM E-Value=0.65) Length = 324 Score = 27.5 bits (58), Expect = 7.1 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +1 Query: 46 IIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPE 198 ++K E LN ++V R +DNS+V+E + + R E +PE Sbjct: 88 LLKVECLN---AFVVRKVDNSVVIERIVAQAKTKRSFSFGRIKPKEQEDPE 135 >SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 578 Score = 27.1 bits (57), Expect = 9.4 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = -1 Query: 473 SATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLIIS 294 +A FL+VCL++ + +T L GG+ AL + + A S S Y + + I+ Sbjct: 75 TAAFLLVCLSSNNGDCQTRLRIVGGI--RALMELLRDALSQDSAS-----YGANDVKFIA 127 Query: 293 RVHSKTASN 267 + S AS+ Sbjct: 128 HLVSTLASS 136 >SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) Length = 687 Score = 27.1 bits (57), Expect = 9.4 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Frame = -1 Query: 350 KKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICP-----SSLCTIAAMQDSTSGSR 186 K V + + + + VH+++ + + G ++++C S LC + S S S Sbjct: 168 KTGQVSQASFLCSLIFAVHPVHTESVAGVVGRADLLCALFFFLSFLCYVKCCSASASSST 227 Query: 185 ASGTAVLW*SKSTASRRGGIKFSKTILLSI 96 AS + S S+ S + S ++I Sbjct: 228 ASSSLSTSSSSSSTSSSSSLTSSSFTNINI 257 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,802,332 Number of Sequences: 59808 Number of extensions: 346152 Number of successful extensions: 1107 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1032 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1105 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -