Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.) 242 1e-64
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43) 30 1.3
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 28 5.4
SB_24522| Best HMM Match : DS (HMM E-Value=0) 28 5.4
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18221| Best HMM Match : HHH (HMM E-Value=0.65) 27 7.1
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 27 9.4
>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 242 bits (593), Expect = 1e-64
Identities = 116/171 (67%), Positives = 137/171 (80%)
Frame = +1
Query: 1 NGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVP 180
NG V KQPLI+ MR +K E L LIS+WV++S D +V +NFIPPLLDAVL DYQR VP
Sbjct: 414 NGELVMKQPLIRAMRTVKTEVLRLISTWVSKSNDPKLVCDNFIPPLLDAVLGDYQRN-VP 472
Query: 181 EAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQ 360
AREPEVLS MA +++LE ++T VP+IFDAVFECTL MINKDFEE+PEHRT FFLLLQ
Sbjct: 473 GAREPEVLSTMATFINKLEANVTENVPQIFDAVFECTLNMINKDFEEFPEHRTNFFLLLQ 532
Query: 361 AVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 513
AV +CF+A L IPP QFKLVLDSI+WAFKHTMRNVADTGL + +L ++
Sbjct: 533 AVVQHCFQALLKIPPEQFKLVLDSIVWAFKHTMRNVADTGLTMHATILAHM 583
>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
Length = 636
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -2
Query: 301 SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKT----VLQAHELQEQQSFGNPKAQHREE 134
S PE+ RL I+ LQ+ V+ +C R+ P K +L H Q FG Q R +
Sbjct: 315 SHPEHPGRLQSIWARLQETGVVNMCDRVRPRKATLAEILSVHSEQHTMLFGG-STQCRTK 373
Query: 133 VE 128
E
Sbjct: 374 AE 375
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 79 SWVTRSIDNSMVLENFIPPLLD-AVLLDYQRTAVPEAREPEVL--SCMAAIVHRLEG-HI 246
S V + NS + E ++PPLL A + + P+A+ ++L S + +EG +
Sbjct: 491 STVISDLYNSSLREGYLPPLLKRATVCPLPKQKPPKAKVSDILPISLTCQVAKLMEGLTL 550
Query: 247 TSEVPKIFDAVFECTLEMINKDFEE 321
+ +P I D + + K E+
Sbjct: 551 SRALPNILDRLDRNQFAVAGKSTEQ 575
>SB_24522| Best HMM Match : DS (HMM E-Value=0)
Length = 340
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 49 IKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAV 177
++K+ +N I + + + DN LE+FI P+LD +L + Q +
Sbjct: 158 LRKKGINRIGNLLVPN-DNYCKLEDFIQPVLDKMLEEQQNEGI 199
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = +1
Query: 55 KETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRL 234
K T+ +++ + D+ L + L+ Y+R VPE+ L +VHR
Sbjct: 394 KSTMTMLAPDTIVTSDDETALAAW-NELVSKAKYQYKRVVVPESFAANCLFINGTVVHRP 452
Query: 235 EGHITSEVPKIFDAVFECTLEMINKDFEE 321
E I P I+ + + +EM +F +
Sbjct: 453 EKEIPKSYP-IYKGLKDPKVEMEISEFHK 480
>SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)
Length = 324
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 46 IIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPE 198
++K E LN ++V R +DNS+V+E + + R E +PE
Sbjct: 88 LLKVECLN---AFVVRKVDNSVVIERIVAQAKTKRSFSFGRIKPKEQEDPE 135
>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 473 SATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLIIS 294
+A FL+VCL++ + +T L GG+ AL + + A S S Y + + I+
Sbjct: 75 TAAFLLVCLSSNNGDCQTRLRIVGGI--RALMELLRDALSQDSAS-----YGANDVKFIA 127
Query: 293 RVHSKTASN 267
+ S AS+
Sbjct: 128 HLVSTLASS 136
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = -1
Query: 350 KKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICP-----SSLCTIAAMQDSTSGSR 186
K V + + + + VH+++ + + G ++++C S LC + S S S
Sbjct: 168 KTGQVSQASFLCSLIFAVHPVHTESVAGVVGRADLLCALFFFLSFLCYVKCCSASASSST 227
Query: 185 ASGTAVLW*SKSTASRRGGIKFSKTILLSI 96
AS + S S+ S + S ++I
Sbjct: 228 ASSSLSTSSSSSSTSSSSSLTSSSFTNINI 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,332
Number of Sequences: 59808
Number of extensions: 346152
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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