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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)             242   1e-64
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     30   1.3  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           28   5.4  
SB_24522| Best HMM Match : DS (HMM E-Value=0)                          28   5.4  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)                      27   7.1  
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   9.4  

>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score =  242 bits (593), Expect = 1e-64
 Identities = 116/171 (67%), Positives = 137/171 (80%)
 Frame = +1

Query: 1   NGVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVP 180
           NG  V KQPLI+ MR +K E L LIS+WV++S D  +V +NFIPPLLDAVL DYQR  VP
Sbjct: 414 NGELVMKQPLIRAMRTVKTEVLRLISTWVSKSNDPKLVCDNFIPPLLDAVLGDYQRN-VP 472

Query: 181 EAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQ 360
            AREPEVLS MA  +++LE ++T  VP+IFDAVFECTL MINKDFEE+PEHRT FFLLLQ
Sbjct: 473 GAREPEVLSTMATFINKLEANVTENVPQIFDAVFECTLNMINKDFEEFPEHRTNFFLLLQ 532

Query: 361 AVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 513
           AV  +CF+A L IPP QFKLVLDSI+WAFKHTMRNVADTGL +   +L ++
Sbjct: 533 AVVQHCFQALLKIPPEQFKLVLDSIVWAFKHTMRNVADTGLTMHATILAHM 583


>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 301 SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKT----VLQAHELQEQQSFGNPKAQHREE 134
           S PE+  RL  I+  LQ+  V+ +C R+ P K     +L  H  Q    FG    Q R +
Sbjct: 315 SHPEHPGRLQSIWARLQETGVVNMCDRVRPRKATLAEILSVHSEQHTMLFGG-STQCRTK 373

Query: 133 VE 128
            E
Sbjct: 374 AE 375


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 79  SWVTRSIDNSMVLENFIPPLLD-AVLLDYQRTAVPEAREPEVL--SCMAAIVHRLEG-HI 246
           S V   + NS + E ++PPLL  A +    +   P+A+  ++L  S    +   +EG  +
Sbjct: 491 STVISDLYNSSLREGYLPPLLKRATVCPLPKQKPPKAKVSDILPISLTCQVAKLMEGLTL 550

Query: 247 TSEVPKIFDAVFECTLEMINKDFEE 321
           +  +P I D +      +  K  E+
Sbjct: 551 SRALPNILDRLDRNQFAVAGKSTEQ 575


>SB_24522| Best HMM Match : DS (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 49  IKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAV 177
           ++K+ +N I + +  + DN   LE+FI P+LD +L + Q   +
Sbjct: 158 LRKKGINRIGNLLVPN-DNYCKLEDFIQPVLDKMLEEQQNEGI 199


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = +1

Query: 55  KETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMAAIVHRL 234
           K T+ +++     + D+   L  +   L+      Y+R  VPE+     L     +VHR 
Sbjct: 394 KSTMTMLAPDTIVTSDDETALAAW-NELVSKAKYQYKRVVVPESFAANCLFINGTVVHRP 452

Query: 235 EGHITSEVPKIFDAVFECTLEMINKDFEE 321
           E  I    P I+  + +  +EM   +F +
Sbjct: 453 EKEIPKSYP-IYKGLKDPKVEMEISEFHK 480


>SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 46  IIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPE 198
           ++K E LN   ++V R +DNS+V+E  +          + R    E  +PE
Sbjct: 88  LLKVECLN---AFVVRKVDNSVVIERIVAQAKTKRSFSFGRIKPKEQEDPE 135


>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -1

Query: 473 SATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLIIS 294
           +A FL+VCL++   + +T L   GG+   AL + +  A S    S     Y +  +  I+
Sbjct: 75  TAAFLLVCLSSNNGDCQTRLRIVGGI--RALMELLRDALSQDSAS-----YGANDVKFIA 127

Query: 293 RVHSKTASN 267
            + S  AS+
Sbjct: 128 HLVSTLASS 136


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = -1

Query: 350 KKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICP-----SSLCTIAAMQDSTSGSR 186
           K   V  + +    +  +  VH+++ + + G ++++C      S LC +     S S S 
Sbjct: 168 KTGQVSQASFLCSLIFAVHPVHTESVAGVVGRADLLCALFFFLSFLCYVKCCSASASSST 227

Query: 185 ASGTAVLW*SKSTASRRGGIKFSKTILLSI 96
           AS +     S S+ S    +  S    ++I
Sbjct: 228 ASSSLSTSSSSSSTSSSSSLTSSSFTNINI 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,332
Number of Sequences: 59808
Number of extensions: 346152
Number of successful extensions: 1107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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