Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...   183   8e-47
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    36   0.013
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    29   2.7  
U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family p...    28   3.5  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    27   8.1  

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family
            protein 4,isoform a protein.
          Length = 1080

 Score =  183 bits (445), Expect = 8e-47
 Identities = 81/172 (47%), Positives = 121/172 (70%)
 Frame = +1

Query: 4    GVAVTKQPLIKNMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPE 183
            G    K PL+K MR +K+E L L+S++++++ D  ++L++ +PPL DAVL DYQ+  VP+
Sbjct: 746  GEEALKNPLVKTMRAVKREILILLSTFISKNGDAKLILDSIVPPLFDAVLFDYQKN-VPQ 804

Query: 184  AREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQA 363
            AREP+VLS ++ +V +L   +  +VP I  AVF+C+++MINKD E +PEHRT FF L+ +
Sbjct: 805  AREPKVLSLLSILVTQLGSLLCPQVPSILSAVFQCSIDMINKDMEAFPEHRTNFFELVLS 864

Query: 364  VNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEE 519
            +   CF  F+ +PP     V+D+++WAF+HTMRNVA+ GL IL  LL  V E
Sbjct: 865  LVQECFPVFMEMPPEDLGTVIDAVVWAFQHTMRNVAEIGLDILKELLARVSE 916


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 22/81 (27%), Positives = 42/81 (51%)
 Frame = +1

Query: 37  NMRIIKKETLNLISSWVTRSIDNSMVLENFIPPLLDAVLLDYQRTAVPEAREPEVLSCMA 216
           N  + +++ ++ I++  T++I  S+ L+N +   +D  L D +   V    EP+  S   
Sbjct: 192 NSNLKREQLVHCITASKTKAIITSVTLQNIMLDAIDQKLFDVEGIEVYSVGEPKKNSGFK 251

Query: 217 AIVHRLEGHITSEVPKIFDAV 279
            +  +L+  IT+E PK  D V
Sbjct: 252 NLKKKLDAQITTE-PKTLDIV 271


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 173 LFLKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFSY 352
           LF KL+  KY    Q+       + + K  KYL  SLN+  +  T+    I  + + FS 
Sbjct: 614 LFDKLLEQKY----QEGLLQDTKLIIQKTDKYLSSSLNLFNEYNTQEPSKIYPVNEIFSL 669

Query: 353 YCRRSIQTV 379
           +CR   + V
Sbjct: 670 FCRYGSENV 678


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 303 NHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRLTSFRNSSPLV 160
           ++FQ TF +C + +W F   + F S+ +      + RL  ++ SS L+
Sbjct: 158 DNFQCTFNECYQKYWEFHEQVVF-SLIETLSLLLFIRLYIWKRSSHLL 204


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = -3

Query: 471 CHIPHCMFKCPDYGI*NQLELC----WWYAQKCFETVCID 364
           C IP C+  C  +G   Q   C     W  + C  T CID
Sbjct: 822 CSIPRCLTNCTGHGKCIQPNSCECDAGWMGETCSVTSCID 861


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 270 KYFWYFRSYMSFKSVHDCCHARQYFRLT-SFRNSSPLVIQKHSIE 139
           KY++  R  ++F++  D C+   ++  T SF NSS  +++K   E
Sbjct: 703 KYYYSIRFNVTFQNTGDICYIAYHYPYTYSFLNSSLSMLKKRKQE 747


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 68  TLFQVGLHARLITVW----FWKTLFHLFSMLCFWITKGLLFLKL 187
           TLF VG H   +  W     W T+  + S++ F++  GL+  KL
Sbjct: 186 TLFSVGSHETTLRAWTAMSIWSTI-SIASIITFFVMAGLVMRKL 228


>U21321-10|AAG00048.2|  325|Caenorhabditis elegans T box family
           protein 35 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 349 LLLQAVNTNCFKAFLSI-PPAQFKLVLDSIIWAFKHTMRNVAD 474
           LL+Q V  +CF  F +  PP + K  L + I   ++  R +AD
Sbjct: 154 LLIQKVFRDCFGCFQAHGPPVEIKFALLTFIATTRYCSRRIAD 196


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 201 YFRLTSFRNSSPLVIQKHSIEKRWN 127
           YFR  S RN+ P V+Q+H  E  W+
Sbjct: 535 YFR--SKRNAKPFVLQQHRTEPTWS 557


>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
            R08E3.1b protein.
          Length = 1465

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 467  TFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTA--CSNKKNSVLCSGYSS 315
            T L VC  +  +  +  L      L N ++QFVLT    S   N   C G+ S
Sbjct: 938  TVLDVCSQSTTIGYQAQLTTRTSTLTNRIQQFVLTCFKTSYANNDTSCHGHGS 990


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
            R08E3.1a protein.
          Length = 1512

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -1

Query: 467  TFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTA--CSNKKNSVLCSGYSS 315
            T L VC  +  +  +  L      L N ++QFVLT    S   N   C G+ S
Sbjct: 938  TVLDVCSQSTTIGYQAQLTTRTSTLTNRIQQFVLTCFKTSYANNDTSCHGHGS 990


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 405 STIQVGFRFHNLGI*TYNEECGRYRFTNI 491
           S I +   FHN  I  YN +CGR R  ++
Sbjct: 61  SAIAIALIFHNDEISNYNWQCGRARLPSL 89


>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 WKTLFHLFSMLCFWITKGLL 175
           W  +FH+FS+ C W+   LL
Sbjct: 54  WFLVFHIFSITCQWLCSFLL 73


>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +1

Query: 277 VFECTLEMINKDFEEYPE---HRTEFFLLLQAVNTNCFKAFLSIPPAQFKLVLDSIIWAF 447
           +  C L +++  F+  P    H  E FL    +   C  A  SIP  + +     + W +
Sbjct: 261 IMVCFLGIVSLTFDLIPGVCGHFVENFLFFHPIPI-CLTAMFSIPRWKTEFEKSYLPWKY 319

Query: 448 KHTMRNVADTGLQI 489
           +  +R +    ++I
Sbjct: 320 RRNLRKIRQMSMEI 333


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 286 IQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAHELQ 179
           ++ L  + L   +L  L  C  LLPC  VL+AH  Q
Sbjct: 557 LELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQ 592


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 339 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSY 244
           CSMF+ + +V+    +  F  C++  WY   Y
Sbjct: 81  CSMFYKMKQVYGRSIEYIFDPCLQSKWYLDVY 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,456
Number of Sequences: 27780
Number of extensions: 285210
Number of successful extensions: 850
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)