Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 426 RFHNLGI*TYNEECGRY 476
           R  N+GI ++  ECG+Y
Sbjct: 362 RLVNIGIISWGAECGKY 378


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 110 WFWKTLFHLFSMLCFW 157
           WFW T F +  +L  W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -2

Query: 289 YIQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAH 188
           ++ +LHQ+    +K+Y   +C      K  ++ H
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELH 278


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 110 WFWKTLFHLFSMLCFW 157
           WFW T F +  +L  W
Sbjct: 179 WFWVTPFTVLPLLKVW 194


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 253 QKLYVLQVCARLLPCKTVLQAH 188
           +KL+  Q+C ++L  K  L+ H
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRH 24


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 477 GICHIPHCMFKCPDY 433
           G+C  P C   C DY
Sbjct: 281 GVCKWPGCEVICEDY 295


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 123 LYSTSSRCCAFGLPKD 170
           LY+T S C A G  KD
Sbjct: 176 LYTTPSICTALGYLKD 191



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 67  NLISSWVTRSIDNSMVLENFIPPLLDAVLLD 159
           N  SS    +  N+  +E+F PP L   LL+
Sbjct: 615 NQTSSASRENTSNTTSMESFKPPTLTESLLN 645


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 123 LYSTSSRCCAFGLPKD 170
           LY+T S C A G  KD
Sbjct: 171 LYTTPSICTALGYLKD 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,684
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)