Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0482 - 17643603-17643955,17644024-17646604                       29   2.3  
07_03_0278 + 16205749-16205880,16208229-16208555                       28   5.2  
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368...    28   5.2  
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611...    27   6.9  
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    27   6.9  
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372     27   6.9  

>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 150  YRFGYDVADSLTGDYKSQQEERNGDLVQGSYSLVEPDGTRRVVD 281
            Y FG  + + LTG   +  E    DLV+     VE DG  RV+D
Sbjct: 875  YSFGVVMLELLTGKAPAGPELGEKDLVRWVCGCVERDGVDRVLD 918


>07_03_0278 + 16205749-16205880,16208229-16208555
          Length = 152

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 310 LKPLMESAA*STTRRVPSG 254
           L+PL+E+AA S+ RR PSG
Sbjct: 64  LRPLVEAAAASSRRRTPSG 82


>02_05_0965 +
           33136373-33136512,33136595-33136688,33136845-33136889,
           33137007-33137174,33137247-33137331,33137531-33137637,
           33137918-33137998,33138232-33138284,33138361-33138460,
           33138911-33139054,33139268-33139364,33139528-33139611,
           33139904-33140123,33140204-33140297,33140406-33140975,
           33141348-33141449,33141564-33141656,33141834-33141836
          Length = 759

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -3

Query: 270 DVCRRVQPKSKILEPNLHCVLLVDFCNHRLKSPLHHSQICIEEEDRILRF 121
           DV RRV      LE NL   LLV   +H +    +H     EE D +  F
Sbjct: 270 DVIRRVHNAVSGLEDNLDRTLLVVVSDHGMTEGGNHGGSSYEETDSLALF 319


>10_08_0745 -
           20260136-20260236,20260890-20260937,20261025-20261165,
           20261358-20261603,20261744-20262583,20263253-20263286
          Length = 469

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 226 WFKDLTLWLNPTAHVVSWTTPLTP 297
           WF    +WL  + HV+S  TPL P
Sbjct: 17  WFVLFAVWLCGSQHVLSQKTPLEP 40


>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 234 GSYSLVEPDGTRRVVDYAADSINGFNAVV 320
           G+Y LV  D     V+Y+  +++G+N VV
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVV 137


>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
          Length = 290

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 FDPLPQYRFGYDVADSLTGDYKSQQEE 212
           +DPL  Y   YD+A+    DY+  + E
Sbjct: 139 YDPLLDYPINYDIAEQYAYDYERYEAE 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,446
Number of Sequences: 37544
Number of extensions: 145457
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)