Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   4.7  
Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 359 NNCRRSRHEWLFTYYGIEAINGVSGVVHDTTCAVGF 252
           N    SR+ W+F Y  +  I   +  V  T C VGF
Sbjct: 14  NFSEESRNFWVFIYLKVRCIRFYADFVSFTICFVGF 49


>Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 305 AINGVSGVVHDTTCAVGFNQRVRSLNQISIAFFLLTFVIT 186
           A +GVS +V + T  +GF+  +  +  ++ A +L+  +++
Sbjct: 23  ADDGVSTIVEERTTMLGFSSFLIGVKSVTFAIYLVLLIVS 62


>Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 305 AINGVSGVVHDTTCAVGFNQRVRSLNQISIAFFLLTFVIT 186
           A +GVS +V + T  +GF+  +  +  ++ A +L+  +++
Sbjct: 23  ADDGVSTIVEERTTMLGFSSFLIGVKSVTFAIYLVLLIVS 62


>Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 305 AINGVSGVVHDTTCAVGFNQRVRSLNQISIAFFLLTFVIT 186
           A +GVS +V + T  +GF+  +  +  ++ A +L+  +++
Sbjct: 23  ADDGVSTIVEERTTMLGFSSFLIGVKSVTFAIYLVLLIVS 62


>Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 305 AINGVSGVVHDTTCAVGFNQRVRSLNQISIAFFLLTFVIT 186
           A +GVS +V + T  +GF+  +  +  ++ A +L+  +++
Sbjct: 23  ADDGVSTIVEERTTMLGFSSFLIGVKSVTFAIYLVLLIVS 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,926,849
Number of Sequences: 27780
Number of extensions: 125898
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)