Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    29   2.5  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    28   3.3  
At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,...    28   4.4  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   5.8  
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    27   7.7  

>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 168 VADSLTGDYKSQQEERNGDLVQGSYSLVEPDGTRRVVDYAADSINGFNAVVRKE 329
           + +SL  +     E+ NGD+      L++ +    V + +  S +GF++  R +
Sbjct: 154 IGESLLSNRARSPEDGNGDIADNKDDLIDKEEAVSVAETSGSSFSGFSSSPRND 207


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -1

Query: 377 YYCGLCNN----CRRSRHEWLFTYYGIEA 303
           +YC  CN+    C+ +   WL+TY+ + A
Sbjct: 523 WYCSSCNDGPTSCKIATASWLYTYFNLNA 551


>At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P49676 from [Brassica oleracea]
          Length = 469

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 190 ITKVNKKNAMEIWFKDLTLWLNPTAHVV 273
           +T VN K     W K+++L +N TAHV+
Sbjct: 166 MTTVNLKEQDPAWGKNMSLRINSTAHVL 193


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 174 DSLTGDYKSQQEERNGDLVQGSYSLVE 254
           DS  GD  SQ EE +GD ++ SY L E
Sbjct: 349 DSSDGDSSSQDEE-DGDKIRNSYGLPE 374


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 141 LPQYR-FGYDVADSLTGDYKSQQEERNGDLVQGSYSLVEPD 260
           LP ++  G+DVA    G ++ Q    +GDL+ G Y L + +
Sbjct: 474 LPSFKDLGFDVASRRVGRFQEQFVVESGDLI-GKYFLAKQE 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,554,146
Number of Sequences: 28952
Number of extensions: 118411
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)