Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C10f
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    30   0.14 
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    28   0.74 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   1.3  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   3.0  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   6.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    24   9.1  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 196 VFDNSFHVLLDERFILQLIYEYIQINNILI 107
           +  NS+ +L++  FIL +++ Y+ + NILI
Sbjct: 101 ICSNSYSILVNYGFILNMVHMYVHVFNILI 130


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 56  ENYLEIITRFYFLFENIYQYIIDLNVFIDQLQDEAFIQQ 172
           E+ L II R   L + I Q +++ N  +D+L +EA+  Q
Sbjct: 289 ESLLPIIQRQKELSKMINQEVVEQNSMLDELSNEAYANQ 327


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 147  CKMKRSSNKTWKLLSK---TLKENNYCVNHYICM 239
            C+  R    TW  LS    TLKE  +C N+ I M
Sbjct: 946  CQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVM 979


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 265 VYSWPNERETSCGILSLQH 321
           +Y+WP +     GI+S++H
Sbjct: 292 IYNWPEQLFADAGIMSIEH 310


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 282 IGPGINRSHNKSMAPYKYNDSHN 214
           I PG+   H K+  PY   DSH+
Sbjct: 392 IVPGVLTEHGKTKNPYPNVDSHS 414


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 288 RDFLWHFIATA 320
           RDF W F+ATA
Sbjct: 833 RDFFWRFVATA 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,582
Number of Sequences: 5004
Number of extensions: 32355
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)