Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C10f
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 2e-20
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 28 4.0
SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_52501| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 27 7.0
SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06) 27 7.0
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 27 7.0
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 27 7.0
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 7.0
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 27 7.0
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14) 27 7.0
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 7.0
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15) 27 7.0
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 27 7.0
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 27 9.2
>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 95.1 bits (226), Expect = 2e-20
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Frame = +2
Query: 53 KENYLEIITRFYFLFENIYQYIIDLNVFIDQLQDEAFIQQNMETVIKDIEGKQLLCESLY 232
+EN+LEI+TRFY FE++++Y++DLN + Q+N+ + D + CESLY
Sbjct: 85 RENHLEILTRFYKAFESVHKYVVDLNSKARFFPSPSGCQENISLIFVDFQ-----CESLY 139
Query: 233 LYGAMLLLCDLFIPGPMRERLLVAFYRYSTSQS--QSNIDDXCXXXRDTGY 379
LYG MLL+ D+ +RER+LV+++RY +++ SN+DD C R TG+
Sbjct: 140 LYGVMLLVIDMKFESDVRERMLVSYHRYCAARADVDSNLDDVCKLLRSTGF 190
Score = 30.7 bits (66), Expect = 0.57
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 394 KRPAEYPXEYFSRVNI 441
KRPA+YP +YFSR+ I
Sbjct: 197 KRPAKYPEDYFSRIEI 212
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 317 STSQSQSNIDDXCXXXRDTGYDPQNAKDLQNI 412
S+SQ +SNIDD D AKD QN+
Sbjct: 374 SSSQEESNIDDVDRTLTQEDVDENQAKDKQNL 405
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 131 VFIDQLQDEAFIQQNMETVIKDIEGKQLLCESLYLYGAMLLLCD-LFIPGPMRERLL 298
V+ D L+DEA + + LCES+Y +LLL D + +P +R+R+L
Sbjct: 544 VYDDLLRDEALGVIERVPYGEPVTCLGHLCESIYAQDGVLLLNDRVVVPMSLRKRVL 600
>SB_5490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 160 VHPTKHGNCYQRH*RKTTIV*IIIFVWGHAFI--M*PVYSW 276
+HP K+ H R T II+++W H+FI + PV+ W
Sbjct: 120 IHPLKYTELM--HSRTATG--IIVYIWAHSFIVALLPVFRW 156
>SB_48260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 270 INRSHNKSMAPYKYNDSHNSCFPSMSL-----ITVSMFCWMNASSCN*SMNTFRSIIY 112
IN H+ ++A +D + P + L + ++M W + CN S T + IIY
Sbjct: 38 INARHSSTLAKKVSSDEMSGLEPLVFLARGAKVMLTMNLWSSVGLCNGSTGTIKDIIY 95
>SB_52501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 270 INRSHNKSMAPYKYNDSHNSCFPSMSL-----ITVSMFCWMNASSCN*SMNTFRSIIY 112
IN H+ ++A +D + P + L + ++M W + CN S T + IIY
Sbjct: 38 INARHSSTLAKKVSSDEMSGLEPLVFLARGAKVMLTMNLWSSVGLCNGSTGTIKDIIY 95
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 553 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 581
>SB_54562| Best HMM Match : RVT_1 (HMM E-Value=1.4e-06)
Length = 909
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 863 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 891
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 306 NATRSLSLIGPGINRSHNKSMAPYKYNDSHNSCFPSMSLITVSMFCWMNASS 151
N T + SL G N +HN S+ ++ N +HNS + T + W ++
Sbjct: 98 NTTHNSSLWTQG-NTTHNSSLWTHRGNTTHNSSLWTQGNTTHNSSLWTQGNT 148
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 1094 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 1122
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 61 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 89
>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 1485
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 1186 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 1214
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 727 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 755
>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
Length = 707
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 387 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 415
>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1412
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 783 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 811
>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 364
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 110 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 138
>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
Length = 638
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 390 LCESIYAQDGVLLLNDRVVVPVSLRKRVL 418
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 215 LCESLYLYGAMLLLCD-LFIPGPMRERLL 298
LCES+Y +LLL D + +P +R+R+L
Sbjct: 169 LCESIYAQDGVLLLNDRVVVPMSLRKRVL 197
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 134 IHSDQ*YIDICFQIENKNV*LFPDSFPLNH 45
+HS + +CF+I ++ V LFP FPL H
Sbjct: 941 LHSLLRKLGLCFKI-SEGVDLFPSLFPLGH 969
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,117,832
Number of Sequences: 59808
Number of extensions: 220015
Number of successful extensions: 511
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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