Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C10f
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41530.1 68418.m05046 hypothetical protein similar to unknown...    29   1.9  
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom...    28   3.3  
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom...    28   3.3  
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ...    27   4.3  
At3g53960.1 68416.m05961 proton-dependent oligopeptide transport...    27   7.5  
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ...    27   7.5  
At2g39200.1 68415.m04815 seven transmembrane MLO family protein ...    27   7.5  
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    26   10.0 
At2g34820.1 68415.m04275 basic helix-loop-helix (bHLH) family pr...    26   10.0 
At1g20530.1 68414.m02558 hypothetical protein                          26   10.0 

>At5g41530.1 68418.m05046 hypothetical protein similar to unknown
           protein (pir |T01544)
          Length = 142

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 165 SNKTWKLLSKTLKENNYCVNHYICMGPCFYYVTCLFL 275
           +N +W L+    +ENN+C   +  +    ++V C+ L
Sbjct: 99  ANASWSLMLLIQQENNFCFWMFYVIPTSLFFVCCVLL 135


>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 731

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 329 IDLCCSDKMPQEV-SLSLGQE*TGHIIKAWPHTNIMIHTIVV 207
           + +CC   +  E+ +L+LG+E  GH+I+     NI++   +V
Sbjct: 435 VTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALV 476


>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 KMKRSSNKTWKLLSKTLKENNYCVNHYI 233
           + KRS  K W+  + ++ +   C  HYI
Sbjct: 29  RCKRSDGKQWRCTAMSMADKTVCEKHYI 56


>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 150 KMKRSSNKTWKLLSKTLKENNYCVNHYI 233
           + KRS  K W+  + ++ +   C  HYI
Sbjct: 29  RCKRSDGKQWRCTAMSMADKTVCEKHYI 56


>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 362

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 144 NCKMKRSSNKT-WKLLSKTLKENNYCVNHYICMGP-CFYYVTC 266
           N +M R  +K  WKLL +  K+       Y+C  P C ++  C
Sbjct: 53  NLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDPC 95


>At3g53960.1 68416.m05961 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 602

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 GKQLLCESLYLYGAMLLLCDLFIPG 277
           G  LL  ++YL G +LL    FIPG
Sbjct: 110 GTVLLATTIYLMGLILLTLSWFIPG 134


>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
           (CC-NBS class), putative domain signature CC-NBS exists,
           suggestive of a disease resistance protein. Closest
           homolog in Col-0 to RPP13.
          Length = 835

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 77  TRFYFLFENIY--QYIIDLNVFIDQLQDEAFIQQNMETVIKDI 199
           ++  FL+ +I+   Y IDL   I  L  E FIQ + E +++D+
Sbjct: 417 SKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDV 459


>At2g39200.1 68415.m04815 seven transmembrane MLO family protein /
           MLO-like protein 12 (MLO12) identical to SP|O80961
           MLO-like protein 12 (AtMlo12) {Arabidopsis thaliana},
           membrane protein Mlo12 [Arabidopsis thaliana]
           gi|14091594|gb|AAK53805; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 576

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 75  LHVFIFYLKTYINILLI*MYS*INCKMKRSSNKTWKLLSKTLK 203
           LH+FIF L  +  +  I  Y+    KMK+   K+W+  +KT++
Sbjct: 154 LHIFIFVLAVFHVLYCIITYALGKTKMKKW--KSWERETKTIE 194


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 162 SSNKTWKLLSKTLKENNYCVNHY 230
           + NKTW ++ KT  + + C++ Y
Sbjct: 216 NKNKTWFIVDKTKLKEDVCIDQY 238


>At2g34820.1 68415.m04275 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 291

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 260 DLFIPGPMRERLLVAFYRYST-SQSQSNIDDXCXXXRDTGYDPQN 391
           D F+P P R+RL+ + Y  +T +  QS   +      DT + P++
Sbjct: 91  DFFLPTPKRQRLVNSSYNCNTQNHFQSRNPNFFDPFGDTDFVPES 135


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 98  ENIYQYIIDLNVFIDQLQDEAFIQQNMETVIKDIEGKQLLCE 223
           E +Y  ++ +N  +++ + E   Q+N+   +KDIE K ++ E
Sbjct: 519 EAVYTILMHVNHQVEKQRMELEEQRNVNGSVKDIERKLMMLE 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,474,369
Number of Sequences: 28952
Number of extensions: 156985
Number of successful extensions: 383
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)