Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.43 
UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.56 
UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;...    33   5.2  

>UniRef50_Q8HXJ6 Cluster: Putative uncharacterized protein; n=1;
           Macaca fascicularis|Rep: Putative uncharacterized
           protein - Macaca fascicularis (Crab eating macaque)
           (Cynomolgus monkey)
          Length = 133

 Score = 36.3 bits (80), Expect = 0.43
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 439 CGGVEIGFISLP--VAWILFLYHFNLKLCCQLIEVGSCNCTF 320
           C   ++  IS+P    W+L   H+   LCC L+++G CNC +
Sbjct: 3   CPSGDLSLISVPWHQCWMLSTRHYFNLLCCCLLKLGVCNCLY 44


>UniRef50_Q22KP6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 686

 Score = 35.9 bits (79), Expect = 0.56
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -2

Query: 433 GVEIGFISLPVAWILFLYHFNLKLCCQLIEVGSCNCTFY--YKTDLIVK 293
           G+   F+S+P +++L  Y F LKL C++I++ +C  + Y  YK + + K
Sbjct: 462 GLLSSFLSVPFSYLLVKYLFQLKLKCKVIDIKNCPESKYQQYKKNTLTK 510


>UniRef50_Q5LKU8 Cluster: Transcriptional regulator, LysR family;
           n=4; Rhodobacteraceae|Rep: Transcriptional regulator,
           LysR family - Silicibacter pomeroyi
          Length = 294

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 385 LYHFNLKLCCQLIEVGSCNCTFYYK 311
           +Y  NL+ CCQL+  G+C+   YY+
Sbjct: 124 VYSDNLRTCCQLLSDGTCDFLLYYR 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,117,865
Number of Sequences: 1657284
Number of extensions: 6763958
Number of successful extensions: 11754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11751
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)