Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271...    28   4.0  
02_04_0302 - 21829991-21830626,21831864-21832784                       28   4.0  
11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997     27   6.9  
07_01_0821 + 6631942-6632144,6632155-6632680,6634264-6634619,663...    27   9.1  

>05_01_0346 -
           2710420-2710683,2711595-2711672,2711861-2711888,
           2711973-2712022,2712112-2712165,2712240-2712281,
           2712583-2712646,2713831-2713851,2714310-2714479,
           2714746-2714910
          Length = 311

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 385 LYHFNLKLCCQL---IEVGSCNCTFYYKTDLI 299
           L+HF+LKL CQL   +E+  C   F  K   +
Sbjct: 241 LHHFHLKLSCQLGKKLEMEHCQVRFLIKNSFV 272


>02_04_0302 - 21829991-21830626,21831864-21832784
          Length = 518

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 439 CGGVEIGFISLPVAWILFLYHFNLKL 362
           C G+ +G  +L +A    LYHF+ KL
Sbjct: 451 CPGINLGLANLELALASLLYHFDWKL 476


>11_06_0488 + 24185248-24185622,24185741-24186277,24186371-24186997
          Length = 512

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 CGGVEIGFISLPVAWILFLYHFNLKL 362
           C G+  G ++L +     LYHFN +L
Sbjct: 448 CPGIAFGLVNLELVLASLLYHFNWEL 473


>07_01_0821 +
           6631942-6632144,6632155-6632680,6634264-6634619,
           6634683-6634877,6635419-6635623
          Length = 494

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 439 CGGVEIGFISLPVAWILFLYHFNLKL 362
           C G+ +G  ++ +A    LYHF+ KL
Sbjct: 366 CPGINLGLANIELALANLLYHFDWKL 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,206
Number of Sequences: 37544
Number of extensions: 163771
Number of successful extensions: 292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)