Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    31   0.66 
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    31   0.66 
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    29   2.0  
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +L T
Sbjct: 158 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 199


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +L T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 228


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +L T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENILET 158


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +  T
Sbjct: 117 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 158


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +  T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 473 PEMKH*NFSIVMWGC-RDWFYFVARRVDSFFISFQFEALLST 351
           P +KH   S+++WGC         RR+ S    FQ+E +  T
Sbjct: 187 PTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYENIFET 228


>Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical
           protein W02A2.5 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 299 YEVGFIVKCTIT*PYLDQLTAKLQIEMI 382
           +++GFI KC +T P     T  L IE +
Sbjct: 376 FKLGFIPKCEVTEPTASDATKPLDIESV 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,611
Number of Sequences: 27780
Number of extensions: 171635
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)