Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-30
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 92 3e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 60 1e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 49 2e-06
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 38 0.007
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 35 0.047
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 33 0.14
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 3.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 28 4.1
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 5.4
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 7.1
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 27 7.1
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 7.1
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +2
Query: 320 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 499
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 322
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 91.9 bits (218), Expect = 3e-19
Identities = 37/87 (42%), Positives = 61/87 (70%)
Frame = +2
Query: 260 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 439
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 440 IIDAPGHRDFIKNMITGTSQADCAVLI 520
++DAPGH+ F+ NMI+G +QAD VL+
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLV 252
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +2
Query: 392 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILV 43
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/104 (26%), Positives = 50/104 (48%)
Frame = +2
Query: 209 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 388
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 389 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
++ ++ F + I+D PGH+DF ++ + D +++
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVV 109
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 37.5 bits (83), Expect = 0.007
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Frame = +2
Query: 128 AEFGTRTQFVIRD*PKMGKEK-THINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRT 289
AE GT ++++R +M + + + V+G+VD+GKST T G L G +R
Sbjct: 208 AELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRL 265
Query: 290 I-EKFEKEA---QEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 457
K E E+ +G + + + G +D A E+SK +T ID G
Sbjct: 266 FRHKHEMESGRTSSVGNDILGFDNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAG 324
Query: 458 HRDFIKNMITG 490
H ++K I G
Sbjct: 325 HERYLKTTIFG 335
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.015
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 380 RGITI 394
RGIT+
Sbjct: 1987 RGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 34.7 bits (76), Expect = 0.047
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 355
M K+ N+ VI HVD GKST T L+ K G I A + G+ F
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AAAKAGETRF-----T 56
Query: 356 DKLKAERERGITID---IALWKF--ETSKYYVTIIDAPGHRDFIKNMITGTSQAD 505
D K E++R ITI I+L+ E+ Y+T P R F+ N+I D
Sbjct: 57 DTRKDEQDRCITIKSTAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVD 111
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.1 bits (72), Expect = 0.14
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +2
Query: 173 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 346
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 347 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 490
+ + L R G D+ +T++D PGH IK +I G
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG 122
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.5 bits (68), Expect = 0.44
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Frame = +2
Query: 191 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 358
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 359 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLI 520
E A E S +T ID GH ++K I G + D A+L+
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLV 226
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 394 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 440 IIDAPGHRDFIKNMITGTSQADCAVLI 520
IID PGH F G+S D A+L+
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILV 708
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 359 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+ K E ER ITI + Y +D PGH + M+ G + D A+L+
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLL 94
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -2
Query: 511 SAISLRGSCDH-VLDEISVSRSIN-DGNIVLA---SFELPESNIDCDTTLTLSL*FVQYP 347
SAIS S + ++ ++ S +N N +A + +++ TT+T S YP
Sbjct: 993 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYP 1052
Query: 346 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
S+ + + +F D T N T V +++
Sbjct: 1053 SLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = +2
Query: 383 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
GIT I + + + +D PGH F G D +++
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIV 168
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 385 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 245
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,355
Number of Sequences: 59808
Number of extensions: 317372
Number of successful extensions: 734
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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