Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C07f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 225 1e-59
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 225 1e-59
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 225 1e-59
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 225 1e-59
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 133 8e-32
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 116 1e-26
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 82 2e-16
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 75 2e-14
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 52 2e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 52 2e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 51 4e-07
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 49 2e-06
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 46 2e-05
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 41 6e-04
At5g13650.2 68418.m01585 elongation factor family protein contai... 39 0.002
At5g13650.1 68418.m01584 elongation factor family protein contai... 39 0.002
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 38 0.005
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 32 0.20
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 32 0.20
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 29 1.9
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 29 1.9
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 28 3.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 28 3.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 28 3.3
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 24 3.7
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 28 4.4
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 4.4
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 27 5.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 225 bits (550), Expect = 1e-59
Identities = 105/115 (91%), Positives = 108/115 (93%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 355
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 356 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (550), Expect = 1e-59
Identities = 105/115 (91%), Positives = 108/115 (93%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 355
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 356 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (550), Expect = 1e-59
Identities = 105/115 (91%), Positives = 108/115 (93%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 355
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 356 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 225 bits (550), Expect = 1e-59
Identities = 105/115 (91%), Positives = 108/115 (93%)
Frame = +2
Query: 176 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 355
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 356 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 133 bits (321), Expect = 8e-32
Identities = 54/110 (49%), Positives = 83/110 (75%)
Frame = +2
Query: 191 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 370
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 371 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
ERERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L+
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILV 347
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 116 bits (279), Expect = 1e-26
Identities = 50/112 (44%), Positives = 78/112 (69%)
Frame = +2
Query: 185 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 364
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 365 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLV 209
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 82.2 bits (194), Expect = 2e-16
Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Frame = +2
Query: 128 AEFGTRTQFVIRD*P-KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFE 304
A TR F +R K ++K H+NI IGHVD GK+T T L I +K++
Sbjct: 56 ASQSTRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYD 115
Query: 305 KEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 484
+ +D ER RGITI+ A ++ET + +D PGH D++KNMI
Sbjct: 116 E---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 160
Query: 485 TGTSQADCAVLI 520
TG +Q D A+L+
Sbjct: 161 TGAAQMDGAILV 172
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 75.4 bits (177), Expect = 2e-14
Identities = 47/137 (34%), Positives = 69/137 (50%)
Frame = +2
Query: 110 GEGAPRAEFGTRTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT 289
G+ + FGT + + R + K H+N+ IGHVD GK+T T +
Sbjct: 41 GDDLSSSTFGTSSFW--RSMATFTRNKPHVNVGTIGHVDHGKTTLTAAIT---------- 88
Query: 290 IEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 469
K E GK +DK E++RGITI A ++ET+K + +D PGH D+
Sbjct: 89 -----KVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 143
Query: 470 IKNMITGTSQADCAVLI 520
+KNMITG +Q D +L+
Sbjct: 144 VKNMITGAAQMDGGILV 160
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 52.4 bits (120), Expect = 2e-07
Identities = 37/107 (34%), Positives = 52/107 (48%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 380 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+GITI A Y V IID PGH DF + D A+L+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 52.4 bits (120), Expect = 2e-07
Identities = 37/107 (34%), Positives = 52/107 (48%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 380 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+GITI A Y V IID PGH DF + D A+L+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 51.2 bits (117), Expect = 4e-07
Identities = 33/94 (35%), Positives = 49/94 (52%)
Frame = +2
Query: 188 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 367
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 368 AERERGITIDIALWKFETSKYYVTIIDAPGHRDF 469
E+ERGITI A K+ + IID PGH DF
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDF 174
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 48.8 bits (111), Expect = 2e-06
Identities = 33/107 (30%), Positives = 50/107 (46%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 380 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
R IT+ + + Y + +ID+PGH DF + T +D A+++
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVL 104
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 45.6 bits (103), Expect = 2e-05
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 380 RGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
RGITI + + +E + + + +ID PGH DF + + + A+L+
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 40.7 bits (91), Expect = 6e-04
Identities = 42/128 (32%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Frame = +2
Query: 164 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 343
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 344 AWVLDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGHRDFIKNMITGTS 496
LDKL +RERGIT+ E S Y + +ID PGH DF + S
Sbjct: 103 ---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 497 QADCAVLI 520
A+L+
Sbjct: 158 ACQGALLV 165
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/90 (32%), Positives = 40/90 (44%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 380 RGITIDIALWKFETSKYYVTIIDAPGHRDF 469
RGITI V IID PGH DF
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDF 159
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/90 (32%), Positives = 40/90 (44%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 380 RGITIDIALWKFETSKYYVTIIDAPGHRDF 469
RGITI V IID PGH DF
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDF 158
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 37.5 bits (83), Expect = 0.005
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 367
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 368 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
E ++ + ++Y + +ID+PGH DF + D A+++
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 32.3 bits (70), Expect = 0.20
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 380 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
R I+I + L + Y I+D PGH +F M AD AVLI
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 32.3 bits (70), Expect = 0.20
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Frame = +2
Query: 200 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 379
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 380 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
R I+I + L + Y I+D PGH +F M AD AVLI
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 29.1 bits (62), Expect = 1.9
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Frame = +2
Query: 170 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 340
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 341 YAWVLDKLK---------AERERGITIDIALWKF--ETSKYYVTIIDAPGHRDFIKNMIT 487
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 488 GTSQADCAVLI 520
G + D A+L+
Sbjct: 147 GAAIVDGALLL 157
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 29.1 bits (62), Expect = 1.9
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Frame = +2
Query: 170 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 340
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 341 YAWVLDKLK---------AERERGITIDIALWKF--ETSKYYVTIIDAPGHRDFIKNMIT 487
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 488 GTSQADCAVLI 520
G + D A+L+
Sbjct: 147 GAAIVDGALLL 157
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 440 IIDAPGHRDFIKNMITGTSQADCAVLI 520
+ID PGH F G+S D A+L+
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILV 139
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 440 IIDAPGHRDFIKNMITGTSQADCAVLI 520
+ID PGH F G+S D A+L+
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILV 798
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 440 IIDAPGHRDFIKNMITGTSQADCAVLI 520
+ID PGH F G+S D A+L+
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILV 731
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 203 IVVIGHVDSGKSTTTGHL 256
I ++GHVD GK+T ++
Sbjct: 504 ITIMGHVDHGKTTLLDYI 521
Score = 22.6 bits (46), Expect(2) = 3.7
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +2
Query: 359 KLKAERERGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
K+ A GIT I +K +D PGH F G D A+++
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIV 582
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 27.9 bits (59), Expect = 4.4
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Frame = +2
Query: 170 PKMGKEKTHINIVVIGHVDSGKST----TTG-HLIYKCGGIDKR-TIEKFEKEAQEMGKG 331
P++ + INI IGHV GKST +G H + +++ TI+ A+
Sbjct: 25 PEVISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSELERNITIKLGYANAKIYKCE 84
Query: 332 SFKYAWVLDKLKAERERGITIDIALWKFETSKY--YVTIIDAPGHRDFIKNMITGTSQAD 505
+ +E + D++ + K +V+ +D PGH + M+ G + D
Sbjct: 85 KCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRHVSFVDCPGHDILMATMLNGAAIMD 144
Query: 506 CAVLI 520
A+LI
Sbjct: 145 GALLI 149
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 434 VTIIDAPGHRDFIKNMITGTSQADCAVLI 520
+ +ID PGH F G++ D A+L+
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILV 586
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 413 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLI 520
FE SK +V+ +D PGH + M+ G + D A+L+
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLL 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,700
Number of Sequences: 28952
Number of extensions: 220387
Number of successful extensions: 584
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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