Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   264   5e-73
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.8  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  264 bits (646), Expect = 5e-73
 Identities = 124/134 (92%), Positives = 129/134 (96%)
 Frame = -1

Query: 437 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 257 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 78
           SNKKTRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 77  VTNAAARLRSQENE 36
           VT A+ARLRSQENE
Sbjct: 121 VTYASARLRSQENE 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -1

Query: 281 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 102
           L   +  G   + +  +P+G+   +   + EL  L +  + +   + HG+    R LIV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 101 R 99
           R
Sbjct: 123 R 123


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 168 KQEVLRRDRSWCLFEEAEAD 109
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,228
Number of Sequences: 438
Number of extensions: 2770
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)