Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 190 6e-49
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 186 6e-48
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 186 6e-48
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 29 2.5
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 28 4.4
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.8
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 7.7
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 7.7
At3g07210.1 68416.m00860 expressed protein predicted using genef... 27 7.7
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 27 7.7
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 190 bits (462), Expect = 6e-49
Identities = 89/134 (66%), Positives = 108/134 (80%)
Frame = -1
Query: 437 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 257 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 78
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVV 119
Query: 77 VTNAAARLRSQENE 36
VTN ARLRSQE+E
Sbjct: 120 VTNRLARLRSQEDE 133
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 186 bits (454), Expect = 6e-48
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = -1
Query: 437 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 257 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 78
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 77 VTNAAARLRSQENE 36
V+N RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 186 bits (454), Expect = 6e-48
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = -1
Query: 437 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 257 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 78
S+KKTRH LPNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 77 VTNAAARLRSQENE 36
V+N RLRSQE+E
Sbjct: 120 VSNKLGRLRSQEDE 133
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 380 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPN 225
+R Q D Y K++R WR G + +R + YL I GSN + L N
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSNDYSSIFLTN 194
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -1
Query: 224 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQ 45
G +K +V VK++E+L + NRK + S K+ I + ++ V A+L
Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149
Query: 44 E 42
E
Sbjct: 150 E 150
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 434 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 324
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 215 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 120
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 474 GEHCRVSKRNIQDGYKTCLQADNRQKEDE 388
G + + RN+ G KTCL N +E+E
Sbjct: 509 GRNSCLIARNLLSGLKTCLDVSNYMRENE 537
>At3g07210.1 68416.m00860 expressed protein predicted using
genefinder
Length = 547
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 125 SKRHHERSLRSTSCFASSRF 184
S+ HHER RS SC +SSR+
Sbjct: 451 SEFHHERVGRSQSCVSSSRW 470
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 392 TKRFIRHQSDRY-DKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFR 216
+++ I + ++Y DK+K ++ K + N +R R+ ++ + Y RH+L N +
Sbjct: 216 SRKLIDYVENKYVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNHVQ 275
Query: 215 K 213
K
Sbjct: 276 K 276
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,872
Number of Sequences: 28952
Number of extensions: 215304
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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