Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C03f
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 0.67
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 0.89
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 1.2
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 1.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 4.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 4.7
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 6.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 6.3
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 8.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 8.3
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 0.67
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 85 DLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGEC 255
D ESI +F S K T++ PV+ + AP P +S +L T+ E +C
Sbjct: 731 DKESIFGSLFGSKKKQTEIPPVSSSPPHNDAPPKAKP-ISAPSELP-NTTSVAEAKC 785
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 0.89
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 170 TGLHRPWCL 196
TGLHRPWCL
Sbjct: 684 TGLHRPWCL 692
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 254 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 162
HS ++P+E+W R E P + D L+ T
Sbjct: 45 HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +1
Query: 13 YPKMYKLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQ-PVTQPSVADRAPSTL 189
YP Y + A + + + N F + P + LQ P T S + P ++
Sbjct: 372 YPISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQLPKSV 431
Query: 190 VPGVSTNEDLSCQTSD 237
PG++ D S +S+
Sbjct: 432 TPGLAYPHDSSMLSSN 447
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 374 LPTRDRQQIPSRPGRRP 424
LP+R +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 285 IGRVAQVIVDALPFLAVGGLARKVLVRRDARHQGRWSPV 169
+GR+A+V++D L G R L R +R G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSGAWRTAL-SRASRLSGLYAPL 1350
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 285 IGRVAQVIVDALPFLAVGGLARKVLVRRDARHQGRWSPV 169
+GR+A+V++D L G R L R +R G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSGAWRTAL-SRASRLSGLYAPL 1350
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 42 RLSRGGVRAEHGHRGSGVDH*SDLHI 119
R RG + +EHG R S +D D HI
Sbjct: 144 RDGRGELGSEHGERRSAMDGLRDRHI 169
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 257 STITCATRPITP*SLTEPTSSI*ESAVARVHRTST 361
+T TC++RP S TS++ ES + TST
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 247 GECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYID 360
G+C +YL A +N I + +++I G S +D
Sbjct: 158 GDCAPFYLAPAGSNLEIDQLSRLVEILEGGEISSEILD 195
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 24.6 bits (51), Expect = 8.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 49 LAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQP 159
L CAQ++D G + +IN + + + T+L + +P
Sbjct: 423 LPVVCAQSIDGGCVYEVINLVQSVLRRVTKLFQLKEP 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,467
Number of Sequences: 5004
Number of extensions: 36095
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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