Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C03f
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 30 1.2
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 2.1
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 29 2.7
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 28 3.6
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094... 28 3.6
11_01_0803 - 7136331-7136347,7136596-7136731 28 4.7
07_01_0724 + 5529642-5531141 28 4.7
01_06_1063 + 34194853-34195671 27 8.3
01_05_0229 + 19538547-19538607,19539807-19540226,19540305-19540366 27 8.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 8.3
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 315 DVGSVSDYGVIGRVAQVIVDALPFLAVGGLARKV 214
D +D GV+ +A +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +1
Query: 373 APDQRPPTD--PITPRPETLPMNQGCGWRNPDGVA 471
A D P TD P+ P+P T G WRNP A
Sbjct: 43 AADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAA 77
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 70 NMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVP 195
N++ D + + + TS++ P L+P+ P+V AP P
Sbjct: 17 NVEASDDHAAFDAMATSSRRPPSLRPLRHPNVTSLAPVIFPP 58
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 28 KLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVP 195
K+L FL Q + ++ ++ PPTQ P S A AP+T VP
Sbjct: 63 KVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVP 118
>01_06_0725 +
31508156-31508277,31508950-31509118,31509311-31509406,
31510037-31510097,31510387-31510451,31511104-31511178,
31511276-31511351,31512140-31512303,31512398-31512421
Length = 283
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 384 ETANRSHHAQAGDPA-NEPGLRLAEP*RRCLP 476
E RSHH D N+PG+R + RRC P
Sbjct: 53 EEDTRSHHEALLDRTKNKPGIRAVDVRRRCCP 84
>11_01_0803 - 7136331-7136347,7136596-7136731
Length = 50
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 249 PFLAVGGLARKVLVRRDARHQGRW 178
P A GG A K L RRD +GRW
Sbjct: 18 PSPAGGGAAAKGLERRDRERRGRW 41
>07_01_0724 + 5529642-5531141
Length = 499
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 334 SGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWRNP 459
+ P ++++ C A D+ DP + RP+ + ++ GW P
Sbjct: 122 AAPFAAFLADACAAGDREGRPDPFSRRPDWVVVDFAHGWLPP 163
>01_06_1063 + 34194853-34195671
Length = 272
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 376 PDQRPPTDPITPRP 417
PDQ PP P TPRP
Sbjct: 21 PDQLPPPSPHTPRP 34
>01_05_0229 + 19538547-19538607,19539807-19540226,19540305-19540366
Length = 180
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 216 VLVRRDARHQGRWSPVSDTRLRDRLQL 136
+L RDA H G P S TRL RL L
Sbjct: 70 LLKERDASHTGIGGPGSQTRLGHRLSL 96
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 112 FTSAKPPTQLQPVTQPSVADRAPS 183
+ AKPPT L+P P+ + PS
Sbjct: 221 YAPAKPPTALRPAIPPAAMPKPPS 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,893
Number of Sequences: 37544
Number of extensions: 321113
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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