Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C03f
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               31   0.69 
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)                   30   1.2  
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            30   1.2  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         29   2.8  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  28   4.9  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   27   6.4  
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   8.5  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        27   8.5  
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)               27   8.5  

>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 304 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP-MNQGC 444
           G N   +     P   Y+ V    P  +PP  P TP+P   P +  GC
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAPKIKNGC 242


>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
          Length = 225

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 79  TGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLV 192
           TG +   +NQ+ T+ +P T  +PV +  + D  P+ L+
Sbjct: 118 TGMVPYTVNQVMTTGRPRTTTRPVQRQDLPDSDPAPLL 155


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 295 ITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWR 453
           +T G   I  R G G   +++D+C      R   D      E +    GCG R
Sbjct: 60  VTFGHGWISARQGEGHVQTWMDICKTGRRSRSDMDGYLQEREKVTFRHGCGQR 112


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 250 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 423
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 424 LPMNQG 441
            P   G
Sbjct: 750 YPCRTG 755


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 28   KLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 177
            K + +G + +  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 1024 KFVSVGRMRSLFSQ-ADTKVLQAACNQLITSKKAPTRSQILRQIRSDERA 1072


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 124  KPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGECVNYYLC 273
            KP    +P T+PS   + PS  V   S ++    +   GQ G+    + C
Sbjct: 945  KPSPDSKPATKPSTDSKTPSAAVASNSDSKACPVECMTGQCGKSCPAHCC 994


>SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 28  KLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 177
           K + +G + +  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 58  KFVSVGRMRSLFSQ-ADTEVLQAACNQLITSKKAPTRSQILRQIRSDERA 106


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 192  HQGRWSP--VSDTRLRDRLQLRWGLR 121
            H   W+P  ++DT LR+ +++ WGLR
Sbjct: 2979 HTIEWTPAILNDTALREGVRVNWGLR 3004


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  NMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAP 180
           N  T +LES IN++  +  PP Q   ++ P  +D  P
Sbjct: 184 NFGTNNLESAINEVVPALTPP-QTNIISVPGKSDNKP 219


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +1

Query: 202 STNEDLSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPD 381
           ST+   SC  +DG +G   +Y +  +  NT   DG      +V    C  + DV  L   
Sbjct: 220 STSSTNSCPNTDGVKGG--SYQVRESCPNT---DGVQGGSYQVNE--CIRFNDVIFLCKS 272

Query: 382 QRPPTDPITPRPETLPMNQ 438
           Q PP+    P      +NQ
Sbjct: 273 QGPPSPSAGPTKPPRSVNQ 291


>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 628

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 240 AVGGLARKVLVRRDAR---HQGRWSPVSDTRLRDRLQLRWG 127
           A+GG++R+   +   R    QG+W P+ D ++      RWG
Sbjct: 271 AIGGMSRRDASKSGERFDPRQGKWKPIGDMKI-----CRWG 306


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -3

Query: 82  RCPCSARTPPRESR*VEACTS 20
           R  CSARTPPR  R   ACTS
Sbjct: 434 RRACSARTPPRR-RPFTACTS 453


>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
          Length = 667

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 376 PDQRPPTDPITPRPETLP 429
           P   PPT P TP P TLP
Sbjct: 431 PPTPPPTPPPTPPPTTLP 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,916
Number of Sequences: 59808
Number of extensions: 326348
Number of successful extensions: 1168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)