Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C03f
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   1.3  
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    29   1.7  
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative        29   1.7  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   3.0  
At5g19340.1 68418.m02305 expressed protein                             28   4.0  
At1g09155.1 68414.m01021 SKP1 interacting partner 3-related low ...    27   5.3  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    27   6.9  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    27   9.2  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    27   9.2  
At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containi...    27   9.2  

>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 64  AQNMDTGDLESIINQIFTSA---KPPTQLQP-VTQPSVADRAPSTLVPGVSTNEDLSCQT 231
           A ++D G+LES  ++  + +        + P ++  S  D AP+  +P VST+E +    
Sbjct: 376 ALSVDKGNLESAKSESSSESVLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEPM---- 431

Query: 232 SDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGS--GPCSS 351
            +G+  ECVN      A+   + +G +++  RV    G CSS
Sbjct: 432 YEGE--ECVNTVPPVCADKEPVYEGESLLGKRVEKDVGDCSS 471


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 88  LESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGE 252
           +E+ I  I     PP  L PVT    A ++PS+L P +S       Q  D +  E
Sbjct: 220 IETTIPSIILPPPPPGPLSPVT---TAQKSPSSLPPSLSLQRSSEQQDLDTKREE 271


>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
          Length = 233

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +1

Query: 271 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCL---APDQRPPTDPITPRPETLPMNQG 441
           C A+N  ++  G  ++  R   GPC   + V C+   AP    P   +    +  P N  
Sbjct: 131 CGASNTCMVCRGA-ILSWRYKCGPCMLDVHVECVNSSAPAATEPQMDLNTSQDPQPYNDE 189

Query: 442 CG 447
           CG
Sbjct: 190 CG 191


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 411 GRDGICWRSLVGSQTADVDVR*TRATADSYID 316
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 160 SVADRAPSTLVPGVSTNEDLSCQTSDGQEGECVN 261
           ++A+  PST  P +S + DLS   SDG +  C+N
Sbjct: 8   TMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40


>At1g09155.1 68414.m01021 SKP1 interacting partner 3-related low
           similarity to SKP1 interacting partner 3 [Arabidopsis
           thaliana] GI:10716951
          Length = 289

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 201 DARHQGRWSPVSDTRLRDRLQL 136
           D RH   WSP SD+R  + +QL
Sbjct: 109 DQRHYWSWSPRSDSRFSEGVQL 130


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  SRSPVSMFCAHAAARKPMSRSLYIFG 15
           S  PV  FC HAAA K ++ S + FG
Sbjct: 323 STQPVLRFCEHAAAVKAIAWSPHHFG 348


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 245 KGSASTITCATRPITP*SLTEPTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRP 412
           K   +T TC++ P +  S +  TSS  +S   R  R   +    P+ D+   P+ P
Sbjct: 2   KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSP 57


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 438 LVHWQGLRPGRDGICWRSLVGSQTADVDVR*TRATAD 328
           +V +QGL+P      W  L G +  +V VR TR   +
Sbjct: 685 VVEYQGLKPNETADKWIILQGVKHGEVHVRVTRKVTE 721


>At3g02650.1 68416.m00256 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1077

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 94  SIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGE 252
           S+ N  F S  PPT+  PV+ P  AD  P +    ++  E ++      + G+
Sbjct: 549 SVRNIRFFSTSPPTEENPVSLP--ADEIPISSAAELTLEESVASALGFSESGD 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,598,627
Number of Sequences: 28952
Number of extensions: 215291
Number of successful extensions: 686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)