Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C02f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7T8W3 Cluster: Predicted protein; n=1; Nematostella ve...    36   0.74 
UniRef50_A0CQ26 Cluster: Chromosome undetermined scaffold_24, wh...    35   0.98 
UniRef50_UPI0001553357 Cluster: PREDICTED: similar to novel memb...    34   1.7  
UniRef50_A7T7N9 Cluster: Predicted protein; n=1; Nematostella ve...    34   1.7  
UniRef50_Q7VD58 Cluster: Ferrochelatase; n=20; Cyanobacteria|Rep...    33   5.2  
UniRef50_O96282 Cluster: Putative uncharacterized protein PFB095...    32   6.9  
UniRef50_Q8D4D7 Cluster: Transcriptional regulator; n=8; Gammapr...    32   9.2  
UniRef50_Q24DR1 Cluster: Kelch motif family protein; n=1; Tetrah...    32   9.2  

>UniRef50_A7T8W3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 129

 Score = 35.5 bits (78), Expect = 0.74
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 284 TVRSCSCSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLC 427
           TV  C C  C Y   LR  LC +   C  C   +  +C CS+    +C
Sbjct: 84  TVLKCICCMCMYFMCLRLRLCILCEACAKCL--KVFMCMCSVLNVRIC 129


>UniRef50_A0CQ26 Cluster: Chromosome undetermined scaffold_24, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_24,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1021

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 305 SGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLC 427
           S CS  R       +  V  GSCS ++ST C+C    ST C
Sbjct: 257 SSCSGGRKCLDPTAATGVCAGSCSQYQSTNCYCGTSTSTYC 297


>UniRef50_UPI0001553357 Cluster: PREDICTED: similar to novel member
           of the keratin associated protein 4 (Krtap4) family;
           n=1; Mus musculus|Rep: PREDICTED: similar to novel
           member of the keratin associated protein 4 (Krtap4)
           family - Mus musculus
          Length = 292

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +2

Query: 293 SCSCSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLCFCSIRRP 448
           SC  S C   RS R  LC  +  C   S +R + C  S  R T C  S  RP
Sbjct: 103 SCCRSSC---RSSRCRLCCGSSSCCGSSYYRPSCCISSYRRPTCCISSYCRP 151


>UniRef50_A7T7N9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 239

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 CSGCSYIRSLRSSLCSIAV-YCGSCSLHRSTLCFCSLHRSTLCFCSI 439
           CS CS +     S+CS+ +  CG+CS+H      CS+H      CS+
Sbjct: 124 CSVCS-VDLRMCSVCSVHLRMCGACSVHFHMFSACSVHLRMCSACSV 169



 Score = 33.5 bits (73), Expect = 3.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 CSGCSYIRSLRSSLCSIAV-YCGSCSLHRSTLCFCSLHRSTLCFCSI 439
           CS CS +     S CS+ +  C +CS+H      CS+H      CS+
Sbjct: 84  CSACS-VHLRMCSACSVHLRMCSACSVHLRMCSACSVHLRMCSVCSV 129



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 CSGCSYIRSLRSSLCSIAV-YCGSCSLHRSTLCFCSLHRSTLCFCSI 439
           CS CS +     S CS+ +  C +CS+H      CS+H      CS+
Sbjct: 74  CSVCS-VHLRMCSACSVHLRMCSACSVHLRMCSACSVHLRMCSACSV 119



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 305 SGCSYIRSLRSSLCSIAVY-CGSCSLHRSTLCFCSLHRSTLCFCSI 439
           S CS +     S CS+ +  CG+CS+H      CS+H      CS+
Sbjct: 155 SACS-VHLRMCSACSVHLRKCGACSVHFRMFSACSVHLRMCSVCSV 199


>UniRef50_Q7VD58 Cluster: Ferrochelatase; n=20; Cyanobacteria|Rep:
           Ferrochelatase - Prochlorococcus marinus
          Length = 391

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 114 LTEALKLPPEVLELP--RWRWVWLTPMRRWRGKIRFCTFL 1
           L EA KLP +V   P  +W+W W      W G++    F+
Sbjct: 333 LDEAAKLPEKVKLYPQEKWQWGWNNSAEVWNGRVAMFVFI 372


>UniRef50_O96282 Cluster: Putative uncharacterized protein PFB0950w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0950w - Plasmodium falciparum
           (isolate 3D7)
          Length = 307

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 293 SCSCSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLCFC 433
           SC CS      SL S +CS    C  CS   +  C CS   S +C C
Sbjct: 197 SCLCSCICSCSSLCSCICSCICSC-ICSCICTCTCICSCLCSCICSC 242



 Score = 31.9 bits (69), Expect = 9.2
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 296 CSCSG---CSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLCFC 433
           CSC+    CS I S  SSLCS    C  CS   S +C C+   S LC C
Sbjct: 192 CSCAYSCLCSCICSC-SSLCSCICSC-ICSCICSCICTCTCICSCLCSC 238


>UniRef50_Q8D4D7 Cluster: Transcriptional regulator; n=8;
           Gammaproteobacteria|Rep: Transcriptional regulator -
           Vibrio vulnificus
          Length = 290

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 357 TAMLHKELRSERM*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQLD 196
           TA+  +  R+ ++ +  EQLQ+  V     L  Q ERS  +  Q  +E+RQQLD
Sbjct: 41  TALFERNTRNVQLTKAGEQLQVECVT----LFAQFERSIHRVKQCAREERQQLD 90


>UniRef50_Q24DR1 Cluster: Kelch motif family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Kelch motif family
           protein - Tetrahymena thermophila SB210
          Length = 739

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 21/81 (25%), Positives = 41/81 (50%)
 Frame = -3

Query: 435 EQKHRVLRCKEQKHRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLLVWQ 256
           E++ R+L+ K+QK  ++R K +E +      KE+  E      +Q +L  +  L  L  +
Sbjct: 177 EKQQRLLKLKQQKEELMRKKREEEEENLKKQKEIEEEEKKRIEKQKRLDELNRLKKLKEE 236

Query: 255 LERSCMKQGQLPKEQRQQLDR 193
            E+   K+ Q  +E+ ++  R
Sbjct: 237 REQR-EKEKQKKEEEEKEKQR 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,823,437
Number of Sequences: 1657284
Number of extensions: 5490908
Number of successful extensions: 18191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18126
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)