Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242     31   0.74 
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    28   4.0  
04_01_0377 - 4970034-4970687                                           28   5.2  
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415...    27   6.9  

>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
          Length = 544

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 341 LCSIAVYCGSCSLHRSTLC 397
           LC I + CG+CSLH   LC
Sbjct: 505 LCYITMNCGACSLHAKQLC 523


>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 299 SCSGCSYIRSLRS-SLCSIAVYCGS 370
           +C  C   R+LR  S+C +A YCGS
Sbjct: 59  NCDNCFASRNLRKCSVCRVAWYCGS 83


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 164 CGSDDRSGGCYKG 126
           CGS  +SGGCYKG
Sbjct: 178 CGSGCQSGGCYKG 190


>05_03_0394 -
           13440871-13441098,13441197-13441394,13441491-13441594,
           13441687-13442551,13442677-13443045,13443372-13443533,
           13443838-13444056,13444138-13444656,13444742-13444819,
           13446041-13446163
          Length = 954

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 302 CSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELKNL 472
           C  C Y   L +  C  +    +C  H + LC C + R T    ++ R  ++EL  L
Sbjct: 522 CFSCFYDLHLSAVSCQCSPNRFACLNHANILCSCEMDRKT----ALLRYTIEELHTL 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,667
Number of Sequences: 37544
Number of extensions: 178300
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)