Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AK090647-1|BAC03496.1|  353|Homo sapiens   protein.                    31   2.4  
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.           31   3.2  
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         31   3.2  
AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens ...    30   4.3  
BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containi...    29   7.5  
AK000585-1|BAA91271.1|  285|Homo sapiens protein ( Homo sapiens ...    29   9.9  

>AK126902-1|BAC86743.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44954 fis, clone BRAWH2010364. ).
          Length = 247

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 296 CSCSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCF--CSLHRSTLC 427
           C    CS   SLR S C        CSLH S  C   CSLH S  C
Sbjct: 89  CCSLHCSPCCSLRCSPCCSLRCSPCCSLHCSPCCSLQCSLHCSPHC 134


>AK090647-1|BAC03496.1|  353|Homo sapiens   protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 296 CSCSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCF--CSLHRSTLC 427
           C    CS   SLR S C        CSLH S  C   CSLH S  C
Sbjct: 89  CCSLHCSPCCSLRCSPCCSLRCSPCCSLHCSPCCSLQCSLHCSPHC 134


>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
          Length = 1898

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -3

Query: 408 KEQKHRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLLVWQLERSCMKQG 229
           +E+  R    +E+E Q   +  +ELR ER  E+ +Q +LR    L     +  R   ++ 
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEER 321

Query: 228 QLPKEQRQQ 202
           +  +E+R+Q
Sbjct: 322 REQQERREQ 330


>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -3

Query: 408 KEQKHRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLLVWQLERSCMKQG 229
           +E+  R    +E+E Q   +  +ELR ER  E+ +Q +LR    L     +  R   ++ 
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEER 321

Query: 228 QLPKEQRQQ 202
           +  +E+R+Q
Sbjct: 322 REQQERREQ 330


>AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44037 fis, clone TESTI4028823. ).
          Length = 804

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 350 IAVYCGSCSLHRSTLCFCSLHRSTLCFC 433
           +A+Y G  S  RS  CFC    +TL FC
Sbjct: 499 LALYTGIMSSFRSVQCFCIYTGTTLLFC 526


>BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containing
           3 protein.
          Length = 767

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 350 IAVYCGSCSLHRSTLCFCSLHRSTLCFC 433
           +A+Y G  S  RS  CFC     TL FC
Sbjct: 499 LALYTGIMSSFRSVQCFCIYTGMTLLFC 526


>AK000585-1|BAA91271.1|  285|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20578 fis, clone REC00607. ).
          Length = 285

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 420 VLRCKEQKHRVLRCKEQEPQYTAMLHKELRSER 322
           V+ C   K  VLR K  E +    +HK++RS R
Sbjct: 207 VMNCSINKEEVLRYKASENRKKRRVHKKMRSNR 239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,909,302
Number of Sequences: 237096
Number of extensions: 944494
Number of successful extensions: 6543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6537
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)