Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.3  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 273 GLLVWQLERSCM 238
           G  +WQ+ERSCM
Sbjct: 65  GSKIWQMERSCM 76


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -3

Query: 408  KEQKHRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLLVWQLERSC---- 241
            ++Q+ +  + + Q+PQ      ++ + ++  +QP+Q Q       GL+V QL+R      
Sbjct: 1510 QQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVV-QLQRGYNSGN 1568

Query: 240  MKQGQLPKEQRQQ 202
             + G+    Q+QQ
Sbjct: 1569 NRSGEQANSQQQQ 1581



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = -3

Query: 396  HRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQ 295
            H   + ++Q+PQ      ++ + ++  +QP+Q Q
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQ 1528


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 359 YCGSCSLHRST 391
           YC +C LHR T
Sbjct: 542 YCVACGLHRDT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,927
Number of Sequences: 438
Number of extensions: 1700
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)