Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    29   2.5  
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    28   4.4  
At4g21590.1 68417.m03126 bifunctional nuclease, putative similar...    27   7.7  
At3g47660.1 68416.m05188 regulator of chromosome condensation (R...    27   7.7  
At1g04040.1 68414.m00391 acid phosphatase class B family protein...    27   7.7  

>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 435 EQKHRVLRCKEQKHRVLRCKEQEPQYTAMLHKELRSERM*EQPEQLQLRTVL 280
           E+   ++      +++ R KEQ  +Y A++ +EL  ER+    E  QL T+L
Sbjct: 287 EEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERL-GYIELWQLETLL 337


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 302 CSGCSYIRSLRSSLCSIAVYCGSCSLHRSTLCFCSLHRSTLCFCSI 439
           C+ C+Y    R +   + V       H  TLC+     S  C+C I
Sbjct: 519 CTKCNYFLDFRCATLPLTVRLPRYDDHPLTLCYGDEKASGKCWCDI 564


>At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 294

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 120 GPLTEALKLPPEVLELPRWRW 58
           G L      P E+ +LP+WRW
Sbjct: 59  GELAAVCSWPDEIKKLPQWRW 79


>At3g47660.1 68416.m05188 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1)
          Length = 951

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 293 SCSCSGC----SYIRSLRSSLCSIAVYCGSCSLHRS 388
           S  CSGC    +Y+R L +     +V+C SC+  +S
Sbjct: 639 STKCSGCRHPFNYMRKLHNCYNCGSVFCNSCTSKKS 674


>At1g04040.1 68414.m00391 acid phosphatase class B family protein
           similar to SP|P15490 STEM 28 kDa glycoprotein precursor
           (Vegetative storage protein A) {Glycine max}, acid
           phosphatase [Glycine max] GI:3341443; contains Pfam
           profile PF03767: HAD superfamily (subfamily IIIB)
           phosphatase; supporting cDNA
           gi|13926197|gb|AF370572.1|AF370572
          Length = 271

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 503 STKCLWIRYGLGFSVLSLEGDEWSRSIGC 417
           S K  W+   LG+ V  + GD+WS   GC
Sbjct: 227 SEKRKWLM-SLGYRVWGVMGDQWSSFAGC 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,466
Number of Sequences: 28952
Number of extensions: 131846
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)