Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C01f
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 25 0.98
SB_52928| Best HMM Match : PKD (HMM E-Value=0) 29 2.8
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 28 5.0
SB_25002| Best HMM Match : Gemini_mov (HMM E-Value=2.4) 27 6.6
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 6.6
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7) 27 8.7
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 27 8.7
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -2
Query: 277 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 98
C+ CS++ C SC GC L+ + + C+SR G CT S G
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281
Query: 97 G*KCP 83
KCP
Sbjct: 282 DVKCP 286
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 25.4 bits (53), Expect(2) = 0.98
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 211 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 294
+++L++ +++ YC+ NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157
Score = 23.4 bits (48), Expect(2) = 0.98
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 292 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 444
+R YF L+M+G ++ + +L L S R+ G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233
>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
Length = 1624
Score = 28.7 bits (61), Expect = 2.8
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Frame = -1
Query: 338 FPAMMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTFWMMEPLP---WLSYS 168
FPAM +L NG + +++ SL ++ R R L M P+ W S
Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578
Query: 167 KL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILL 9
K TAL+ V++ + + S S L S +S T + + H T S+ ++
Sbjct: 579 KKNETALAYVSVQVPVTNISVPSDLTASLGNSVTFTVKITSHETPTNASYYII 631
>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 312 KL*THHGRKLCQDHLQKLQPRSEAR 386
+L HHGR+L +DHL PR R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 50 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 190
+PP+R S R+ SR T S+P T + S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404
>SB_25002| Best HMM Match : Gemini_mov (HMM E-Value=2.4)
Length = 363
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -3
Query: 492 ARCLPQGN--ELPTDEFSMLVYTI---AVGNSLIRGIGCGTELQSEVVVSV 355
A C PQG+ ++P+ + L + + G +L G+GCG + + V++ V
Sbjct: 68 AGCSPQGDGLQIPSQDTDPLPFKAPSRSSGQALFVGVGCGLAVVAVVIIVV 118
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 101 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 196
TSR NC + P +T ++S +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692
>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
Length = 354
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 477 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 352
Q NE+ +FS + T+ R IGC T Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 307 GSTF*QFPVRCRPTA-CSSTPWCSVSC 230
G T + RP A CS +PWC ++C
Sbjct: 270 GDTNNNVTIAARPKAWCSCSPWCVLTC 296
>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 215 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 81
+ F ++PL L+YS+ RTA+ P ++ + R+W E A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,768
Number of Sequences: 59808
Number of extensions: 323575
Number of successful extensions: 861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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