Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302C01f
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    28   3.3  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    28   3.3  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    28   3.3  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    28   3.3  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical...    27   7.6  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 41  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 196
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 304 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDGVDKHTELVSWKFITLW 480
           FP+N+  I + NY+     +YN+ LK     T+  N+ +   DG    + +++ K+   +
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIA-KYSGYY 375

Query: 481 ETP 489
           E P
Sbjct: 376 EWP 378


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 209
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 209
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 209
           RP  + V Q  HRRL +  PS +     R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 402 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 235
           G GCG + +S  +V   +N D D+   ++E +   EVL NN  S     LV+V   +P+
Sbjct: 63  GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +2

Query: 86  TLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAPXXXXXXXXXXXXXDGTPWSTATS 265
           T  + TS    TTA+S   +T  S  +    +   +              + T  ST  S
Sbjct: 182 TTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTES 241

Query: 266 CGSATDRKLLESTSH*TLDSSWPET 340
             ++TD    ESTS  T DS+  E+
Sbjct: 242 TSTSTDSTTTESTSTST-DSTTTES 265


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 268 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 354
           W+ +GQEI R Y PL   N   +  G Y++I+
Sbjct: 13  WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44


>AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical
           protein Y111B2A.21 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 286 EIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWK 465
           EI++ Y P+ FR  +    V    R+   A K+ S  +PS    A+G G +  T+   W 
Sbjct: 116 EIIQ-YLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTE--TQKFLWS 172

Query: 466 FITL 477
            +T+
Sbjct: 173 ELTV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,599,236
Number of Sequences: 27780
Number of extensions: 238325
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)