Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302C01f
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 32 0.19
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 32 0.19
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 32 0.25
At1g69390.1 68414.m07966 chloroplast division protein, putative ... 30 1.0
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 28 3.1
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 28 3.1
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ... 27 5.4
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf... 27 5.4
At3g12520.1 68416.m01558 sulfate transporter family protein simi... 27 7.1
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 32.3 bits (70), Expect = 0.19
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 73 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 240
+L + NQ E EKL+ NS L+ Y ++ S ++E+Q K + QNV ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343
>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 434
Score = 32.3 bits (70), Expect = 0.19
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 73 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 240
+L + NQ E EKL+ NS L+ Y ++ S ++E+Q K + QNV ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 31.9 bits (69), Expect = 0.25
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 220 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 318
+++D + EY KL + +G + KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418
>At1g69390.1 68414.m07966 chloroplast division protein, putative
(MinE1) identical to chloroplast division protein
homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
Length = 229
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 46 MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 147
+LA + G ELS + Q++E LYN+I G +D
Sbjct: 70 VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 112 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 228
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 112 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 228
K+ + IL+G D A EY Q K IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141
>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +2
Query: 20 NFSLYLRCACSPPAR--ASLN---YPRTLLTKTSRRNCTT 124
NFSL L+C PP + LN +P TL+ K+ CTT
Sbjct: 228 NFSLDLQCVFHPPKQNPHDLNIHDHPLTLMPKSISFTCTT 267
>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
profiles PF03108: MuDR family transposase, PF04434: SWIM
zinc finger
Length = 719
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 220 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 318
+++D + +Y KL + +G + K+FPL F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411
>At3g12520.1 68416.m01558 sulfate transporter family protein similar
to sulfate transporter [Arabidopsis thaliana]
GI:3777483; contains Pfam profiles PF00916: Sulfate
transporter family, PF01740: STAS domain
Length = 677
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 238 RNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERI 417
RN +Y + + NG IVR P+ F I +Y+K R Y +A+ ++ P ERI
Sbjct: 501 RNMKQYP-EAYTYNGIVIVRIDAPIYFANI---SYIKDRLREYEVAIDKHTSKGPDMERI 556
Query: 418 AY 423
+
Sbjct: 557 YF 558
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,275
Number of Sequences: 28952
Number of extensions: 221147
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -