Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B12f
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 303 EERRRWGD*RSSRCGHIWS*SQHWSRRGCYIRSWSYDWCGSGMVNCVG 160
           EERR+W   R  R    W   + W +R  + R  S D  GSG    VG
Sbjct: 181 EERRKWRQRRKWRQRRKWRQRRKWRQRRKWRREGSGDREGSGEEKEVG 228


>SB_23073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 316 SSPYIF*TNLVITLNSDLLRLSGFLV*TFLYCLI 417
           +SPY F   L  T+ S  ++ +GFL+ TF+  +I
Sbjct: 61  NSPYTFHIQLFQTIGSSAIQNAGFLLITFIRQII 94


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 189 CGSGMVNCVG*VGTGVRRYIRSRS 118
           CG+G  N  G  GTG+ RY  S +
Sbjct: 106 CGNGHPNHTGTAGTGIARYCPSNT 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,570,998
Number of Sequences: 59808
Number of extensions: 158290
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)