Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B12f
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    28   2.8  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    27   8.6  

>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 428 LFMKIRQYKNVYTKNPDNLSKSL 360
           L M    YKN++TKN DN+ K +
Sbjct: 304 LIMTTANYKNLFTKNYDNVRKKM 326


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 153 GTGVRRYIRSRSYCWGDQCSRSTRVGGSDG 64
           G G + + +   Y  GD+C+  T++ G DG
Sbjct: 546 GVGKQSFTKECYYVMGDECADYTQLRGPDG 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,186,079
Number of Sequences: 27780
Number of extensions: 116755
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)